Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21640

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21630 and RR42_RS21635 are separated by 28 nucleotidesRR42_RS21635 and RR42_RS21640 are separated by 29 nucleotidesRR42_RS21640 and RR42_RS21645 overlap by 8 nucleotidesRR42_RS21645 and RR42_RS21650 are separated by 43 nucleotides RR42_RS21630: RR42_RS21630 - Asp/Glu racemase, at 182,705 to 183,457 _RS21630 RR42_RS21635: RR42_RS21635 - alpha/beta hydrolase, at 183,486 to 184,328 _RS21635 RR42_RS21640: RR42_RS21640 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 184,358 to 185,458 _RS21640 RR42_RS21645: RR42_RS21645 - N-carbamoylsarcosine amidase, at 185,451 to 186,092 _RS21645 RR42_RS21650: RR42_RS21650 - TetR family transcriptional regulator, at 186,136 to 186,873 _RS21650 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 183.383 kb on + strandat 183.383 kb on + strandat 183.452 kb on + strandat 183.665 kb on + strand, within RR42_RS21635at 183.666 kb on - strand, within RR42_RS21635at 183.666 kb on - strand, within RR42_RS21635at 183.669 kb on + strand, within RR42_RS21635at 183.669 kb on + strand, within RR42_RS21635at 183.669 kb on + strand, within RR42_RS21635at 183.671 kb on + strand, within RR42_RS21635at 183.910 kb on - strand, within RR42_RS21635at 183.931 kb on - strand, within RR42_RS21635at 184.365 kb on + strandat 184.581 kb on - strand, within RR42_RS21640at 185.060 kb on + strand, within RR42_RS21640at 185.061 kb on - strand, within RR42_RS21640at 185.061 kb on - strand, within RR42_RS21640at 185.061 kb on - strand, within RR42_RS21640at 185.061 kb on - strand, within RR42_RS21640at 185.108 kb on + strand, within RR42_RS21640at 185.109 kb on - strand, within RR42_RS21640at 185.109 kb on - strand, within RR42_RS21640at 185.109 kb on - strand, within RR42_RS21640at 185.109 kb on - strand, within RR42_RS21640at 185.110 kb on + strand, within RR42_RS21640at 185.110 kb on + strand, within RR42_RS21640at 185.111 kb on - strand, within RR42_RS21640at 185.201 kb on + strand, within RR42_RS21640at 185.202 kb on - strand, within RR42_RS21640at 185.202 kb on - strand, within RR42_RS21640at 185.393 kb on + strandat 185.518 kb on - strandat 186.090 kb on + strandat 186.243 kb on + strand, within RR42_RS21650at 186.318 kb on + strand, within RR42_RS21650at 186.318 kb on + strand, within RR42_RS21650at 186.319 kb on - strand, within RR42_RS21650at 186.336 kb on - strand, within RR42_RS21650at 186.366 kb on - strand, within RR42_RS21650at 186.366 kb on - strand, within RR42_RS21650at 186.449 kb on + strand, within RR42_RS21650at 186.449 kb on + strand, within RR42_RS21650

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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183,383 + +2.6
183,383 + +0.3
183,452 + -2.2
183,665 + RR42_RS21635 0.21 +1.5
183,666 - RR42_RS21635 0.21 +0.5
183,666 - RR42_RS21635 0.21 -0.2
183,669 + RR42_RS21635 0.22 -0.2
183,669 + RR42_RS21635 0.22 +0.5
183,669 + RR42_RS21635 0.22 -0.1
183,671 + RR42_RS21635 0.22 +1.1
183,910 - RR42_RS21635 0.50 +0.1
183,931 - RR42_RS21635 0.53 +1.4
184,365 + +2.6
184,581 - RR42_RS21640 0.20 -0.2
185,060 + RR42_RS21640 0.64 -2.3
185,061 - RR42_RS21640 0.64 -0.7
185,061 - RR42_RS21640 0.64 +2.3
185,061 - RR42_RS21640 0.64 +1.0
185,061 - RR42_RS21640 0.64 -1.0
185,108 + RR42_RS21640 0.68 +0.4
185,109 - RR42_RS21640 0.68 -0.1
185,109 - RR42_RS21640 0.68 +1.9
185,109 - RR42_RS21640 0.68 +1.4
185,109 - RR42_RS21640 0.68 +0.5
185,110 + RR42_RS21640 0.68 +0.1
185,110 + RR42_RS21640 0.68 -0.1
185,111 - RR42_RS21640 0.68 +1.8
185,201 + RR42_RS21640 0.77 -0.2
185,202 - RR42_RS21640 0.77 -0.7
185,202 - RR42_RS21640 0.77 +0.8
185,393 + +0.7
185,518 - -0.2
186,090 + -0.5
186,243 + RR42_RS21650 0.14 +1.3
186,318 + RR42_RS21650 0.25 +0.9
186,318 + RR42_RS21650 0.25 -1.0
186,319 - RR42_RS21650 0.25 -0.2
186,336 - RR42_RS21650 0.27 +0.5
186,366 - RR42_RS21650 0.31 +0.5
186,366 - RR42_RS21650 0.31 -0.2
186,449 + RR42_RS21650 0.42 -0.2
186,449 + RR42_RS21650 0.42 +1.1

Or see this region's nucleotide sequence