Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21585 and RR42_RS21590 are separated by 457 nucleotides RR42_RS21590 and RR42_RS21595 overlap by 4 nucleotides RR42_RS21595 and RR42_RS21600 are separated by 144 nucleotides
RR42_RS21585: RR42_RS21585 - membrane protein, at 168,250 to 169,857
_RS21585
RR42_RS21590: RR42_RS21590 - hypothetical protein, at 170,315 to 173,065
_RS21590
RR42_RS21595: RR42_RS21595 - IclR family transcriptional regulator, at 173,062 to 173,826
_RS21595
RR42_RS21600: RR42_RS21600 - inorganic pyrophosphatase/exopolyphosphatase, at 173,971 to 174,999
_RS21600
Position (kb) 170
171
172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2 at 169.454 kb on + strand, within RR42_RS21585 at 169.454 kb on + strand, within RR42_RS21585 at 169.454 kb on + strand, within RR42_RS21585 at 169.454 kb on + strand, within RR42_RS21585 at 169.454 kb on + strand, within RR42_RS21585 at 169.454 kb on + strand, within RR42_RS21585 at 169.455 kb on - strand, within RR42_RS21585 at 169.535 kb on + strand, within RR42_RS21585 at 169.863 kb on + strand at 169.864 kb on - strand at 169.984 kb on + strand at 169.985 kb on - strand at 169.985 kb on - strand at 169.985 kb on - strand at 169.985 kb on - strand at 169.985 kb on - strand at 169.985 kb on - strand at 169.985 kb on - strand at 169.985 kb on - strand at 169.985 kb on - strand at 169.985 kb on - strand at 169.985 kb on - strand at 170.141 kb on + strand at 170.142 kb on - strand at 170.236 kb on + strand at 170.237 kb on - strand at 170.237 kb on - strand at 170.238 kb on + strand at 170.238 kb on + strand at 170.238 kb on + strand at 170.238 kb on + strand at 170.239 kb on - strand at 170.239 kb on - strand at 170.239 kb on - strand at 170.239 kb on - strand at 170.239 kb on - strand at 170.239 kb on - strand at 170.239 kb on - strand at 170.239 kb on - strand at 170.239 kb on - strand at 170.239 kb on - strand at 170.239 kb on - strand at 170.239 kb on - strand at 170.464 kb on + strand at 170.464 kb on + strand at 170.579 kb on + strand at 170.606 kb on + strand, within RR42_RS21590 at 170.690 kb on + strand, within RR42_RS21590 at 170.742 kb on - strand, within RR42_RS21590 at 170.829 kb on - strand, within RR42_RS21590 at 170.870 kb on + strand, within RR42_RS21590 at 170.870 kb on + strand, within RR42_RS21590 at 170.870 kb on + strand, within RR42_RS21590 at 170.870 kb on + strand, within RR42_RS21590 at 170.871 kb on - strand, within RR42_RS21590 at 170.871 kb on - strand, within RR42_RS21590 at 170.894 kb on + strand, within RR42_RS21590 at 171.090 kb on - strand, within RR42_RS21590 at 171.422 kb on + strand, within RR42_RS21590 at 171.423 kb on - strand, within RR42_RS21590 at 171.423 kb on - strand, within RR42_RS21590 at 171.423 kb on - strand, within RR42_RS21590 at 171.423 kb on - strand, within RR42_RS21590 at 171.506 kb on + strand, within RR42_RS21590 at 171.506 kb on + strand, within RR42_RS21590 at 171.689 kb on + strand, within RR42_RS21590 at 171.794 kb on + strand, within RR42_RS21590 at 171.794 kb on + strand, within RR42_RS21590 at 171.950 kb on + strand, within RR42_RS21590 at 171.951 kb on - strand, within RR42_RS21590 at 171.951 kb on - strand, within RR42_RS21590 at 171.951 kb on - strand, within RR42_RS21590 at 171.953 kb on + strand, within RR42_RS21590 at 171.953 kb on + strand, within RR42_RS21590 at 171.953 kb on + strand, within RR42_RS21590 at 171.953 kb on + strand, within RR42_RS21590 at 171.953 kb on + strand, within RR42_RS21590 at 171.954 kb on - strand, within RR42_RS21590 at 171.954 kb on - strand, within RR42_RS21590 at 171.954 kb on - strand, within RR42_RS21590 at 172.128 kb on + strand, within RR42_RS21590 at 172.129 kb on - strand, within RR42_RS21590 at 172.155 kb on - strand, within RR42_RS21590 at 172.448 kb on + strand, within RR42_RS21590 at 172.451 kb on + strand, within RR42_RS21590 at 172.451 kb on + strand, within RR42_RS21590 at 172.505 kb on + strand, within RR42_RS21590 at 172.505 kb on + strand, within RR42_RS21590 at 172.505 kb on + strand, within RR42_RS21590 at 172.544 kb on + strand, within RR42_RS21590 at 172.545 kb on - strand, within RR42_RS21590 at 172.613 kb on + strand, within RR42_RS21590 at 172.613 kb on + strand, within RR42_RS21590 at 172.901 kb on + strand at 172.976 kb on + strand at 172.977 kb on - strand at 172.977 kb on - strand at 173.646 kb on + strand, within RR42_RS21595 at 173.646 kb on - strand, within RR42_RS21595 at 173.784 kb on - strand at 173.826 kb on + strand at 173.826 kb on + strand at 173.826 kb on + strand at 173.869 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 169,454 + RR42_RS21585 0.75 -0.2 169,454 + RR42_RS21585 0.75 +0.3 169,454 + RR42_RS21585 0.75 -1.2 169,454 + RR42_RS21585 0.75 -0.5 169,454 + RR42_RS21585 0.75 +1.1 169,454 + RR42_RS21585 0.75 +0.7 169,455 - RR42_RS21585 0.75 -0.6 169,535 + RR42_RS21585 0.80 +0.1 169,863 + +2.1 169,864 - +0.8 169,984 + +1.3 169,985 - +0.9 169,985 - +0.3 169,985 - -2.0 169,985 - +0.5 169,985 - -0.0 169,985 - +1.5 169,985 - -0.4 169,985 - -1.3 169,985 - +0.1 169,985 - -1.6 169,985 - +0.8 170,141 + -0.3 170,142 - +1.3 170,236 + +0.8 170,237 - -0.0 170,237 - -0.2 170,238 + +0.7 170,238 + +1.2 170,238 + +0.3 170,238 + -0.3 170,239 - +0.7 170,239 - +0.5 170,239 - +0.5 170,239 - +0.7 170,239 - +0.9 170,239 - -0.0 170,239 - +0.2 170,239 - +0.9 170,239 - -0.6 170,239 - +0.4 170,239 - +0.2 170,239 - -1.6 170,464 + +1.4 170,464 + -2.5 170,579 + -0.7 170,606 + RR42_RS21590 0.11 -0.9 170,690 + RR42_RS21590 0.14 +0.7 170,742 - RR42_RS21590 0.16 -2.0 170,829 - RR42_RS21590 0.19 +0.8 170,870 + RR42_RS21590 0.20 +0.3 170,870 + RR42_RS21590 0.20 +0.2 170,870 + RR42_RS21590 0.20 +1.7 170,870 + RR42_RS21590 0.20 +0.8 170,871 - RR42_RS21590 0.20 +0.4 170,871 - RR42_RS21590 0.20 +0.5 170,894 + RR42_RS21590 0.21 +1.4 171,090 - RR42_RS21590 0.28 +0.7 171,422 + RR42_RS21590 0.40 +0.6 171,423 - RR42_RS21590 0.40 -1.4 171,423 - RR42_RS21590 0.40 -0.0 171,423 - RR42_RS21590 0.40 -1.2 171,423 - RR42_RS21590 0.40 -0.6 171,506 + RR42_RS21590 0.43 -0.6 171,506 + RR42_RS21590 0.43 +0.3 171,689 + RR42_RS21590 0.50 +1.3 171,794 + RR42_RS21590 0.54 -0.1 171,794 + RR42_RS21590 0.54 -0.5 171,950 + RR42_RS21590 0.59 -1.0 171,951 - RR42_RS21590 0.59 +0.6 171,951 - RR42_RS21590 0.59 +0.2 171,951 - RR42_RS21590 0.59 +0.1 171,953 + RR42_RS21590 0.60 +1.4 171,953 + RR42_RS21590 0.60 +0.4 171,953 + RR42_RS21590 0.60 +0.9 171,953 + RR42_RS21590 0.60 +1.1 171,953 + RR42_RS21590 0.60 -0.1 171,954 - RR42_RS21590 0.60 +0.0 171,954 - RR42_RS21590 0.60 +0.5 171,954 - RR42_RS21590 0.60 +0.6 172,128 + RR42_RS21590 0.66 -0.2 172,129 - RR42_RS21590 0.66 -1.1 172,155 - RR42_RS21590 0.67 -0.4 172,448 + RR42_RS21590 0.78 -1.8 172,451 + RR42_RS21590 0.78 -0.3 172,451 + RR42_RS21590 0.78 +1.0 172,505 + RR42_RS21590 0.80 +1.7 172,505 + RR42_RS21590 0.80 +1.2 172,505 + RR42_RS21590 0.80 -2.7 172,544 + RR42_RS21590 0.81 -1.2 172,545 - RR42_RS21590 0.81 +0.6 172,613 + RR42_RS21590 0.84 +0.3 172,613 + RR42_RS21590 0.84 -2.2 172,901 + +0.1 172,976 + +1.4 172,977 - +0.8 172,977 - -0.4 173,646 + RR42_RS21595 0.76 -0.2 173,646 - RR42_RS21595 0.76 -0.2 173,784 - +0.2 173,826 + +0.7 173,826 + +1.3 173,826 + +1.1 173,869 + +0.0
Or see this region's nucleotide sequence