Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21020 and RR42_RS21025 are separated by 70 nucleotides RR42_RS21025 and RR42_RS21030 are separated by 250 nucleotides RR42_RS21030 and RR42_RS21035 are separated by 33 nucleotides RR42_RS21035 and RR42_RS21040 are separated by 67 nucleotides RR42_RS21040 and RR42_RS21045 are separated by 652 nucleotides
RR42_RS21020: RR42_RS21020 - hypothetical protein, at 44,706 to 45,038
_RS21020
RR42_RS21025: RR42_RS21025 - lipoprotein, at 45,109 to 45,228
_RS21025
RR42_RS21030: RR42_RS21030 - hypothetical protein, at 45,479 to 45,658
_RS21030
RR42_RS21035: RR42_RS21035 - GntR family transcriptional regulator, at 45,692 to 46,408
_RS21035
RR42_RS21040: RR42_RS21040 - hypothetical protein, at 46,476 to 46,667
_RS21040
RR42_RS21045: RR42_RS21045 - cyanate hydratase, at 47,320 to 47,763
_RS21045
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2 at 44.824 kb on + strand, within RR42_RS21020 at 44.824 kb on + strand, within RR42_RS21020 at 44.825 kb on - strand, within RR42_RS21020 at 44.924 kb on + strand, within RR42_RS21020 at 44.941 kb on + strand, within RR42_RS21020 at 45.274 kb on + strand at 45.309 kb on + strand at 45.309 kb on + strand at 45.309 kb on + strand at 45.480 kb on + strand at 45.481 kb on - strand at 45.683 kb on + strand at 45.693 kb on + strand at 45.889 kb on - strand, within RR42_RS21035 at 46.156 kb on - strand, within RR42_RS21035 at 46.212 kb on + strand, within RR42_RS21035 at 46.212 kb on + strand, within RR42_RS21035 at 46.212 kb on + strand, within RR42_RS21035 at 46.244 kb on + strand, within RR42_RS21035 at 46.245 kb on - strand, within RR42_RS21035 at 46.363 kb on - strand at 46.633 kb on + strand, within RR42_RS21040 at 46.724 kb on - strand at 46.736 kb on - strand at 46.736 kb on - strand at 46.908 kb on - strand at 47.173 kb on + strand at 47.174 kb on - strand at 47.174 kb on - strand at 47.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 44,824 + RR42_RS21020 0.35 +1.9 44,824 + RR42_RS21020 0.35 +0.9 44,825 - RR42_RS21020 0.36 -1.9 44,924 + RR42_RS21020 0.65 +0.2 44,941 + RR42_RS21020 0.71 +0.1 45,274 + +1.9 45,309 + -0.6 45,309 + +0.4 45,309 + -1.4 45,480 + +1.4 45,481 - -0.5 45,683 + -0.1 45,693 + +0.9 45,889 - RR42_RS21035 0.27 +0.0 46,156 - RR42_RS21035 0.65 -2.0 46,212 + RR42_RS21035 0.73 -1.9 46,212 + RR42_RS21035 0.73 -1.0 46,212 + RR42_RS21035 0.73 -0.0 46,244 + RR42_RS21035 0.77 -1.9 46,245 - RR42_RS21035 0.77 -0.5 46,363 - +2.0 46,633 + RR42_RS21040 0.82 -0.0 46,724 - +0.4 46,736 - +1.4 46,736 - -2.0 46,908 - +0.0 47,173 + -2.2 47,174 - -0.5 47,174 - -0.2 47,335 - +0.2
Or see this region's nucleotide sequence