Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18865 and RR42_RS18870 are separated by 71 nucleotides RR42_RS18870 and RR42_RS18875 are separated by 58 nucleotides RR42_RS18875 and RR42_RS18880 overlap by 4 nucleotides RR42_RS18880 and RR42_RS18885 are separated by 15 nucleotides RR42_RS18885 and RR42_RS18890 are separated by 78 nucleotides
RR42_RS18865: RR42_RS18865 - hydrolase, at 4,089,361 to 4,089,717
_RS18865
RR42_RS18870: RR42_RS18870 - membrane protein, at 4,089,789 to 4,090,163
_RS18870
RR42_RS18875: RR42_RS18875 - phosphoribosyl-ATP pyrophosphatase, at 4,090,222 to 4,090,602
_RS18875
RR42_RS18880: RR42_RS18880 - phosphoribosyl-AMP cyclohydrolase, at 4,090,599 to 4,091,006
_RS18880
RR42_RS18885: RR42_RS18885 - imidazole glycerol phosphate synthase, at 4,091,022 to 4,091,792
_RS18885
RR42_RS18890: RR42_RS18890 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 4,091,871 to 4,092,617
_RS18890
Position (kb) 4090
4091
4092 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4089.619 kb on - strand, within RR42_RS18865 at 4089.619 kb on - strand, within RR42_RS18865 at 4089.619 kb on - strand, within RR42_RS18865 at 4089.650 kb on + strand, within RR42_RS18865 at 4089.650 kb on + strand, within RR42_RS18865 at 4089.650 kb on + strand, within RR42_RS18865 at 4089.650 kb on + strand, within RR42_RS18865 at 4089.651 kb on - strand, within RR42_RS18865 at 4089.651 kb on - strand, within RR42_RS18865 at 4089.651 kb on - strand, within RR42_RS18865 at 4089.651 kb on - strand, within RR42_RS18865 at 4089.809 kb on - strand at 4089.809 kb on - strand at 4089.832 kb on + strand, within RR42_RS18870 at 4089.832 kb on + strand, within RR42_RS18870 at 4089.833 kb on - strand, within RR42_RS18870 at 4089.833 kb on - strand, within RR42_RS18870 at 4089.833 kb on - strand, within RR42_RS18870 at 4089.833 kb on - strand, within RR42_RS18870 at 4089.851 kb on + strand, within RR42_RS18870 at 4089.856 kb on + strand, within RR42_RS18870 at 4089.856 kb on + strand, within RR42_RS18870 at 4089.856 kb on + strand, within RR42_RS18870 at 4089.856 kb on + strand at 4089.856 kb on + strand, within RR42_RS18870 at 4089.856 kb on + strand, within RR42_RS18870 at 4089.857 kb on - strand, within RR42_RS18870 at 4089.857 kb on - strand, within RR42_RS18870 at 4089.857 kb on - strand, within RR42_RS18870 at 4089.997 kb on + strand, within RR42_RS18870 at 4089.997 kb on + strand, within RR42_RS18870 at 4089.997 kb on + strand, within RR42_RS18870 at 4089.997 kb on + strand, within RR42_RS18870 at 4089.998 kb on - strand, within RR42_RS18870 at 4089.998 kb on - strand, within RR42_RS18870 at 4089.998 kb on - strand, within RR42_RS18870 at 4089.998 kb on - strand, within RR42_RS18870 at 4089.998 kb on - strand, within RR42_RS18870 at 4089.998 kb on - strand, within RR42_RS18870 at 4089.998 kb on - strand, within RR42_RS18870 at 4090.031 kb on - strand, within RR42_RS18870 at 4090.031 kb on - strand, within RR42_RS18870 at 4090.087 kb on + strand, within RR42_RS18870 at 4090.087 kb on + strand, within RR42_RS18870 at 4090.087 kb on + strand, within RR42_RS18870 at 4090.097 kb on - strand, within RR42_RS18870 at 4090.189 kb on + strand at 4090.189 kb on + strand at 4090.190 kb on - strand at 4090.616 kb on - strand at 4091.873 kb on - strand at 4091.873 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 4,089,619 - RR42_RS18865 0.72 +1.7 4,089,619 - RR42_RS18865 0.72 -1.8 4,089,619 - RR42_RS18865 0.72 +0.5 4,089,650 + RR42_RS18865 0.81 +0.8 4,089,650 + RR42_RS18865 0.81 -0.5 4,089,650 + RR42_RS18865 0.81 +0.2 4,089,650 + RR42_RS18865 0.81 +0.4 4,089,651 - RR42_RS18865 0.81 +0.4 4,089,651 - RR42_RS18865 0.81 -1.1 4,089,651 - RR42_RS18865 0.81 -1.6 4,089,651 - RR42_RS18865 0.81 -1.9 4,089,809 - -2.5 4,089,809 - +1.5 4,089,832 + RR42_RS18870 0.11 +0.3 4,089,832 + RR42_RS18870 0.11 +0.1 4,089,833 - RR42_RS18870 0.12 +1.1 4,089,833 - RR42_RS18870 0.12 -0.4 4,089,833 - RR42_RS18870 0.12 -1.3 4,089,833 - RR42_RS18870 0.12 -1.6 4,089,851 + RR42_RS18870 0.17 -1.1 4,089,856 + RR42_RS18870 0.18 +0.2 4,089,856 + RR42_RS18870 0.18 +0.8 4,089,856 + RR42_RS18870 0.18 +0.2 4,089,856 + +0.6 4,089,856 + RR42_RS18870 0.18 -0.3 4,089,856 + RR42_RS18870 0.18 +1.0 4,089,857 - RR42_RS18870 0.18 +0.1 4,089,857 - RR42_RS18870 0.18 +0.5 4,089,857 - RR42_RS18870 0.18 -0.1 4,089,997 + RR42_RS18870 0.55 -0.0 4,089,997 + RR42_RS18870 0.55 +2.0 4,089,997 + RR42_RS18870 0.55 +0.2 4,089,997 + RR42_RS18870 0.55 +1.5 4,089,998 - RR42_RS18870 0.56 -0.3 4,089,998 - RR42_RS18870 0.56 +1.0 4,089,998 - RR42_RS18870 0.56 -0.6 4,089,998 - RR42_RS18870 0.56 +1.5 4,089,998 - RR42_RS18870 0.56 +0.8 4,089,998 - RR42_RS18870 0.56 +0.1 4,089,998 - RR42_RS18870 0.56 -2.2 4,090,031 - RR42_RS18870 0.65 -0.6 4,090,031 - RR42_RS18870 0.65 -1.5 4,090,087 + RR42_RS18870 0.79 +0.3 4,090,087 + RR42_RS18870 0.79 +0.3 4,090,087 + RR42_RS18870 0.79 +0.4 4,090,097 - RR42_RS18870 0.82 -2.1 4,090,189 + -0.2 4,090,189 + +0.9 4,090,190 - +0.3 4,090,616 - -0.8 4,091,873 - -0.6 4,091,873 - +1.2
Or see this region's nucleotide sequence