Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16740

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16735 and RR42_RS16740 are separated by 219 nucleotidesRR42_RS16740 and RR42_RS16745 are separated by 79 nucleotidesRR42_RS16745 and RR42_RS16750 are separated by 56 nucleotidesRR42_RS16750 and RR42_RS16755 are separated by 5 nucleotides RR42_RS16735: RR42_RS16735 - LytR family transcriptional regulator, at 3,621,380 to 3,622,198 _RS16735 RR42_RS16740: RR42_RS16740 - hypothetical protein, at 3,622,418 to 3,622,684 _RS16740 RR42_RS16745: RR42_RS16745 - copper resistance protein CopQ, at 3,622,764 to 3,623,000 _RS16745 RR42_RS16750: RR42_RS16750 - transcriptional regulator, at 3,623,057 to 3,623,641 _RS16750 RR42_RS16755: RR42_RS16755 - FAD-linked oxidase, at 3,623,647 to 3,625,200 _RS16755 Position (kb) 3622 3623Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3621.484 kb on - strand, within RR42_RS16735at 3621.659 kb on + strand, within RR42_RS16735at 3621.660 kb on - strand, within RR42_RS16735at 3621.660 kb on - strand, within RR42_RS16735at 3621.695 kb on + strand, within RR42_RS16735at 3621.702 kb on + strand, within RR42_RS16735at 3621.702 kb on + strand, within RR42_RS16735at 3621.962 kb on + strand, within RR42_RS16735at 3621.962 kb on + strand, within RR42_RS16735at 3621.963 kb on - strand, within RR42_RS16735at 3621.963 kb on - strand, within RR42_RS16735at 3622.074 kb on + strand, within RR42_RS16735at 3622.172 kb on + strandat 3622.197 kb on - strandat 3622.307 kb on - strandat 3622.428 kb on + strandat 3622.506 kb on - strand, within RR42_RS16740at 3622.542 kb on - strand, within RR42_RS16740at 3622.628 kb on + strand, within RR42_RS16740at 3622.629 kb on - strand, within RR42_RS16740at 3622.698 kb on - strandat 3622.980 kb on + strandat 3623.409 kb on + strand, within RR42_RS16750at 3623.469 kb on + strand, within RR42_RS16750at 3623.469 kb on + strand, within RR42_RS16750at 3623.470 kb on - strand, within RR42_RS16750at 3623.567 kb on - strand, within RR42_RS16750at 3623.648 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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3,621,484 - RR42_RS16735 0.13 +3.3
3,621,659 + RR42_RS16735 0.34 -1.2
3,621,660 - RR42_RS16735 0.34 -1.7
3,621,660 - RR42_RS16735 0.34 -0.7
3,621,695 + RR42_RS16735 0.38 -0.3
3,621,702 + RR42_RS16735 0.39 +1.0
3,621,702 + RR42_RS16735 0.39 -2.2
3,621,962 + RR42_RS16735 0.71 +0.0
3,621,962 + RR42_RS16735 0.71 +0.6
3,621,963 - RR42_RS16735 0.71 +0.4
3,621,963 - RR42_RS16735 0.71 +0.4
3,622,074 + RR42_RS16735 0.85 +0.1
3,622,172 + -0.6
3,622,197 - +0.3
3,622,307 - -1.4
3,622,428 + +0.8
3,622,506 - RR42_RS16740 0.33 -0.0
3,622,542 - RR42_RS16740 0.46 -1.1
3,622,628 + RR42_RS16740 0.79 -0.6
3,622,629 - RR42_RS16740 0.79 -0.3
3,622,698 - -2.2
3,622,980 + -1.4
3,623,409 + RR42_RS16750 0.60 +1.5
3,623,469 + RR42_RS16750 0.70 -0.9
3,623,469 + RR42_RS16750 0.70 -0.5
3,623,470 - RR42_RS16750 0.71 +0.5
3,623,567 - RR42_RS16750 0.87 -0.2
3,623,648 + +0.4

Or see this region's nucleotide sequence