Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07945

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07935 and RR42_RS07940 are separated by 4 nucleotidesRR42_RS07940 and RR42_RS07945 are separated by 27 nucleotidesRR42_RS07945 and RR42_RS07950 are separated by 171 nucleotides RR42_RS07935: RR42_RS07935 - peptide ABC transporter ATPase, at 1,704,970 to 1,706,055 _RS07935 RR42_RS07940: RR42_RS07940 - ABC transporter permease, at 1,706,060 to 1,706,947 _RS07940 RR42_RS07945: RR42_RS07945 - ABC transporter permease, at 1,706,975 to 1,707,925 _RS07945 RR42_RS07950: RR42_RS07950 - ABC transporter substrate-binding protein, at 1,708,097 to 1,709,761 _RS07950 Position (kb) 1706 1707 1708Strain fitness (log2 ratio) -3 -2 -1 0 1at 1706.532 kb on + strand, within RR42_RS07940at 1706.563 kb on + strand, within RR42_RS07940at 1706.584 kb on - strand, within RR42_RS07940at 1706.721 kb on + strand, within RR42_RS07940at 1706.722 kb on - strand, within RR42_RS07940at 1707.379 kb on - strand, within RR42_RS07945at 1707.379 kb on - strand, within RR42_RS07945at 1707.386 kb on - strand, within RR42_RS07945at 1707.919 kb on - strandat 1707.919 kb on - strandat 1708.539 kb on + strand, within RR42_RS07950at 1708.539 kb on + strand, within RR42_RS07950at 1708.624 kb on - strand, within RR42_RS07950at 1708.665 kb on + strand, within RR42_RS07950at 1708.737 kb on + strand, within RR42_RS07950at 1708.738 kb on - strand, within RR42_RS07950at 1708.738 kb on - strand, within RR42_RS07950at 1708.853 kb on - strand, within RR42_RS07950at 1708.853 kb on - strand, within RR42_RS07950at 1708.872 kb on + strand, within RR42_RS07950

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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1,706,532 + RR42_RS07940 0.53 -1.3
1,706,563 + RR42_RS07940 0.57 +0.6
1,706,584 - RR42_RS07940 0.59 +0.4
1,706,721 + RR42_RS07940 0.74 +0.1
1,706,722 - RR42_RS07940 0.75 +0.4
1,707,379 - RR42_RS07945 0.42 -1.2
1,707,379 - RR42_RS07945 0.42 -0.7
1,707,386 - RR42_RS07945 0.43 -1.2
1,707,919 - -0.2
1,707,919 - -0.5
1,708,539 + RR42_RS07950 0.27 -0.9
1,708,539 + RR42_RS07950 0.27 +0.8
1,708,624 - RR42_RS07950 0.32 -0.3
1,708,665 + RR42_RS07950 0.34 -0.3
1,708,737 + RR42_RS07950 0.38 +0.0
1,708,738 - RR42_RS07950 0.38 -0.9
1,708,738 - RR42_RS07950 0.38 -2.8
1,708,853 - RR42_RS07950 0.45 -0.2
1,708,853 - RR42_RS07950 0.45 -0.0
1,708,872 + RR42_RS07950 0.47 -0.0

Or see this region's nucleotide sequence