Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07545

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07540 and RR42_RS07545 overlap by 4 nucleotidesRR42_RS07545 and RR42_RS07550 overlap by 4 nucleotides RR42_RS07540: RR42_RS07540 - ABC transporter permease, at 1,611,692 to 1,612,717 _RS07540 RR42_RS07545: RR42_RS07545 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,612,714 to 1,613,562 _RS07545 RR42_RS07550: RR42_RS07550 - ABC transporter, at 1,613,559 to 1,614,278 _RS07550 Position (kb) 1612 1613 1614Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1611.807 kb on + strand, within RR42_RS07540at 1611.808 kb on - strand, within RR42_RS07540at 1611.906 kb on - strand, within RR42_RS07540at 1611.938 kb on + strand, within RR42_RS07540at 1612.007 kb on - strand, within RR42_RS07540at 1612.085 kb on + strand, within RR42_RS07540at 1612.085 kb on + strand, within RR42_RS07540at 1612.099 kb on + strand, within RR42_RS07540at 1612.124 kb on + strand, within RR42_RS07540at 1612.124 kb on + strand, within RR42_RS07540at 1612.124 kb on + strand, within RR42_RS07540at 1612.124 kb on - strand, within RR42_RS07540at 1612.125 kb on - strand, within RR42_RS07540at 1612.125 kb on - strand, within RR42_RS07540at 1612.125 kb on - strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.174 kb on + strand, within RR42_RS07540at 1612.175 kb on - strand, within RR42_RS07540at 1612.175 kb on - strand, within RR42_RS07540at 1612.175 kb on - strand, within RR42_RS07540at 1612.175 kb on - strand, within RR42_RS07540at 1612.175 kb on - strand, within RR42_RS07540at 1612.175 kb on - strand, within RR42_RS07540at 1612.179 kb on - strand, within RR42_RS07540at 1612.179 kb on - strand, within RR42_RS07540at 1612.244 kb on + strand, within RR42_RS07540at 1612.245 kb on - strand, within RR42_RS07540at 1612.294 kb on - strand, within RR42_RS07540at 1612.340 kb on - strand, within RR42_RS07540at 1612.376 kb on + strand, within RR42_RS07540at 1612.376 kb on + strand, within RR42_RS07540at 1612.376 kb on + strand, within RR42_RS07540at 1612.376 kb on + strand, within RR42_RS07540at 1612.376 kb on + strand, within RR42_RS07540at 1612.376 kb on + strand, within RR42_RS07540at 1612.377 kb on - strand, within RR42_RS07540at 1612.377 kb on - strand, within RR42_RS07540at 1612.434 kb on - strand, within RR42_RS07540at 1612.439 kb on + strand, within RR42_RS07540at 1612.439 kb on + strand, within RR42_RS07540at 1612.439 kb on + strand, within RR42_RS07540at 1612.440 kb on - strand, within RR42_RS07540at 1612.440 kb on - strand, within RR42_RS07540at 1612.881 kb on + strand, within RR42_RS07545at 1612.881 kb on + strand, within RR42_RS07545at 1612.881 kb on + strand, within RR42_RS07545at 1612.882 kb on - strand, within RR42_RS07545at 1612.882 kb on - strand, within RR42_RS07545at 1612.882 kb on - strand, within RR42_RS07545at 1612.882 kb on - strand, within RR42_RS07545at 1612.882 kb on - strand, within RR42_RS07545at 1612.882 kb on - strand, within RR42_RS07545at 1613.004 kb on + strand, within RR42_RS07545at 1613.005 kb on - strand, within RR42_RS07545at 1613.005 kb on - strand, within RR42_RS07545at 1613.465 kb on - strand, within RR42_RS07545at 1613.465 kb on - strand, within RR42_RS07545at 1613.545 kb on - strandat 1613.607 kb on + strandat 1613.608 kb on - strandat 1613.608 kb on - strandat 1613.711 kb on + strand, within RR42_RS07550at 1613.711 kb on + strand, within RR42_RS07550at 1613.712 kb on - strand, within RR42_RS07550at 1613.787 kb on + strand, within RR42_RS07550at 1613.814 kb on + strand, within RR42_RS07550at 1613.814 kb on + strand, within RR42_RS07550at 1613.814 kb on + strand, within RR42_RS07550at 1613.814 kb on + strand, within RR42_RS07550at 1613.814 kb on + strand, within RR42_RS07550at 1613.814 kb on + strand, within RR42_RS07550at 1613.814 kb on + strand, within RR42_RS07550at 1613.815 kb on - strand, within RR42_RS07550at 1613.815 kb on - strand, within RR42_RS07550at 1613.815 kb on - strand, within RR42_RS07550at 1613.815 kb on - strand, within RR42_RS07550at 1613.815 kb on - strand, within RR42_RS07550at 1613.815 kb on - strand, within RR42_RS07550at 1613.815 kb on - strand, within RR42_RS07550at 1613.815 kb on - strand, within RR42_RS07550at 1614.154 kb on - strand, within RR42_RS07550at 1614.154 kb on - strand, within RR42_RS07550at 1614.353 kb on + strandat 1614.354 kb on - strandat 1614.468 kb on + strandat 1614.468 kb on + strandat 1614.469 kb on - strandat 1614.494 kb on + strandat 1614.494 kb on + strandat 1614.560 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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1,611,807 + RR42_RS07540 0.11 +0.8
1,611,808 - RR42_RS07540 0.11 +1.2
1,611,906 - RR42_RS07540 0.21 +2.1
1,611,938 + RR42_RS07540 0.24 +0.8
1,612,007 - RR42_RS07540 0.31 +3.2
1,612,085 + RR42_RS07540 0.38 -2.2
1,612,085 + RR42_RS07540 0.38 +2.0
1,612,099 + RR42_RS07540 0.40 -2.0
1,612,124 + RR42_RS07540 0.42 +1.2
1,612,124 + RR42_RS07540 0.42 -1.3
1,612,124 + RR42_RS07540 0.42 +0.2
1,612,124 - RR42_RS07540 0.42 +2.1
1,612,125 - RR42_RS07540 0.42 -0.4
1,612,125 - RR42_RS07540 0.42 -2.9
1,612,125 - RR42_RS07540 0.42 -0.9
1,612,172 + RR42_RS07540 0.47 -0.3
1,612,172 + RR42_RS07540 0.47 +1.5
1,612,172 + RR42_RS07540 0.47 -0.6
1,612,172 + RR42_RS07540 0.47 -0.7
1,612,172 + RR42_RS07540 0.47 -0.5
1,612,172 + RR42_RS07540 0.47 -1.0
1,612,172 + RR42_RS07540 0.47 -0.2
1,612,172 + RR42_RS07540 0.47 -1.3
1,612,173 - RR42_RS07540 0.47 +0.2
1,612,173 - RR42_RS07540 0.47 +0.3
1,612,173 - RR42_RS07540 0.47 +0.8
1,612,173 - RR42_RS07540 0.47 +0.5
1,612,173 - RR42_RS07540 0.47 +0.8
1,612,173 - RR42_RS07540 0.47 +0.4
1,612,173 - RR42_RS07540 0.47 -0.7
1,612,174 + RR42_RS07540 0.47 -2.3
1,612,175 - RR42_RS07540 0.47 +2.3
1,612,175 - RR42_RS07540 0.47 +0.1
1,612,175 - RR42_RS07540 0.47 -0.3
1,612,175 - RR42_RS07540 0.47 +1.1
1,612,175 - RR42_RS07540 0.47 -1.5
1,612,175 - RR42_RS07540 0.47 +0.8
1,612,179 - RR42_RS07540 0.47 -0.9
1,612,179 - RR42_RS07540 0.47 +0.4
1,612,244 + RR42_RS07540 0.54 +0.4
1,612,245 - RR42_RS07540 0.54 -1.7
1,612,294 - RR42_RS07540 0.59 -1.4
1,612,340 - RR42_RS07540 0.63 +0.1
1,612,376 + RR42_RS07540 0.67 -2.9
1,612,376 + RR42_RS07540 0.67 +0.6
1,612,376 + RR42_RS07540 0.67 -0.0
1,612,376 + RR42_RS07540 0.67 +0.7
1,612,376 + RR42_RS07540 0.67 +0.3
1,612,376 + RR42_RS07540 0.67 +0.2
1,612,377 - RR42_RS07540 0.67 -1.0
1,612,377 - RR42_RS07540 0.67 +0.1
1,612,434 - RR42_RS07540 0.72 +0.1
1,612,439 + RR42_RS07540 0.73 +1.1
1,612,439 + RR42_RS07540 0.73 +1.2
1,612,439 + RR42_RS07540 0.73 -0.4
1,612,440 - RR42_RS07540 0.73 +0.8
1,612,440 - RR42_RS07540 0.73 -1.3
1,612,881 + RR42_RS07545 0.20 +1.5
1,612,881 + RR42_RS07545 0.20 -0.2
1,612,881 + RR42_RS07545 0.20 -0.4
1,612,882 - RR42_RS07545 0.20 +0.3
1,612,882 - RR42_RS07545 0.20 -0.5
1,612,882 - RR42_RS07545 0.20 -1.3
1,612,882 - RR42_RS07545 0.20 -0.3
1,612,882 - RR42_RS07545 0.20 +0.0
1,612,882 - RR42_RS07545 0.20 +1.3
1,613,004 + RR42_RS07545 0.34 +0.1
1,613,005 - RR42_RS07545 0.34 -0.9
1,613,005 - RR42_RS07545 0.34 +0.5
1,613,465 - RR42_RS07545 0.88 +1.1
1,613,465 - RR42_RS07545 0.88 -0.9
1,613,545 - -0.7
1,613,607 + -1.8
1,613,608 - +1.0
1,613,608 - -1.6
1,613,711 + RR42_RS07550 0.21 -0.2
1,613,711 + RR42_RS07550 0.21 +0.6
1,613,712 - RR42_RS07550 0.21 -1.1
1,613,787 + RR42_RS07550 0.32 +0.6
1,613,814 + RR42_RS07550 0.35 -0.5
1,613,814 + RR42_RS07550 0.35 +0.4
1,613,814 + RR42_RS07550 0.35 +0.5
1,613,814 + RR42_RS07550 0.35 +0.2
1,613,814 + RR42_RS07550 0.35 +0.1
1,613,814 + RR42_RS07550 0.35 -1.0
1,613,814 + RR42_RS07550 0.35 -1.3
1,613,815 - RR42_RS07550 0.36 -0.1
1,613,815 - RR42_RS07550 0.36 -0.9
1,613,815 - RR42_RS07550 0.36 +1.3
1,613,815 - RR42_RS07550 0.36 -0.4
1,613,815 - RR42_RS07550 0.36 -0.4
1,613,815 - RR42_RS07550 0.36 -1.9
1,613,815 - RR42_RS07550 0.36 -0.6
1,613,815 - RR42_RS07550 0.36 +0.4
1,614,154 - RR42_RS07550 0.83 +0.1
1,614,154 - RR42_RS07550 0.83 -1.1
1,614,353 + +0.5
1,614,354 - -0.5
1,614,468 + +2.5
1,614,468 + -1.4
1,614,469 - -2.0
1,614,494 + +0.0
1,614,494 + +0.6
1,614,560 - -0.5

Or see this region's nucleotide sequence