Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06410 and RR42_RS06415 are separated by 2 nucleotides RR42_RS06415 and RR42_RS06420 are separated by 341 nucleotides RR42_RS06420 and RR42_RS06425 are separated by 305 nucleotides RR42_RS06425 and RR42_RS06430 are separated by 85 nucleotides
RR42_RS06410: RR42_RS06410 - monooxygenase, at 1,404,659 to 1,405,882
_RS06410
RR42_RS06415: RR42_RS06415 - glyoxalase, at 1,405,885 to 1,406,373
_RS06415
RR42_RS06420: RR42_RS06420 - DSBA oxidoreductase, at 1,406,715 to 1,407,365
_RS06420
RR42_RS06425: RR42_RS06425 - anhydrase, at 1,407,671 to 1,408,213
_RS06425
RR42_RS06430: RR42_RS06430 - hypothetical protein, at 1,408,299 to 1,408,529
_RS06430
Position (kb) 1406
1407
1408 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1405.778 kb on + strand at 1405.778 kb on + strand at 1405.779 kb on - strand at 1405.779 kb on - strand at 1406.240 kb on + strand, within RR42_RS06415 at 1406.240 kb on + strand, within RR42_RS06415 at 1406.240 kb on + strand, within RR42_RS06415 at 1406.386 kb on + strand at 1406.387 kb on - strand at 1406.395 kb on - strand at 1406.517 kb on + strand at 1406.518 kb on - strand at 1406.551 kb on + strand at 1406.559 kb on + strand at 1406.560 kb on - strand at 1406.560 kb on - strand at 1406.560 kb on - strand at 1406.560 kb on - strand at 1406.560 kb on - strand at 1406.574 kb on - strand at 1406.682 kb on - strand at 1406.742 kb on + strand at 1406.742 kb on + strand at 1406.742 kb on + strand at 1406.742 kb on + strand at 1406.742 kb on + strand at 1406.743 kb on - strand at 1406.835 kb on + strand, within RR42_RS06420 at 1406.836 kb on - strand, within RR42_RS06420 at 1406.985 kb on + strand, within RR42_RS06420 at 1406.986 kb on - strand, within RR42_RS06420 at 1406.986 kb on - strand, within RR42_RS06420 at 1407.103 kb on - strand, within RR42_RS06420 at 1407.139 kb on + strand, within RR42_RS06420 at 1407.185 kb on - strand, within RR42_RS06420 at 1407.185 kb on - strand, within RR42_RS06420 at 1407.185 kb on - strand, within RR42_RS06420 at 1407.367 kb on - strand at 1407.668 kb on - strand at 1407.756 kb on + strand, within RR42_RS06425 at 1407.963 kb on + strand, within RR42_RS06425 at 1407.964 kb on - strand, within RR42_RS06425 at 1408.088 kb on + strand, within RR42_RS06425 at 1408.088 kb on + strand, within RR42_RS06425 at 1408.089 kb on - strand, within RR42_RS06425 at 1408.089 kb on - strand, within RR42_RS06425 at 1408.089 kb on - strand, within RR42_RS06425 at 1408.089 kb on - strand, within RR42_RS06425 at 1408.153 kb on + strand, within RR42_RS06425 at 1408.154 kb on - strand, within RR42_RS06425 at 1408.167 kb on - strand at 1408.239 kb on + strand at 1408.355 kb on + strand, within RR42_RS06430 at 1408.356 kb on - strand, within RR42_RS06430
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 1,405,778 + -3.2 1,405,778 + -0.4 1,405,779 - -0.1 1,405,779 - +0.4 1,406,240 + RR42_RS06415 0.73 +0.8 1,406,240 + RR42_RS06415 0.73 -0.3 1,406,240 + RR42_RS06415 0.73 +0.1 1,406,386 + +0.1 1,406,387 - +1.1 1,406,395 - +0.5 1,406,517 + -0.7 1,406,518 - -1.3 1,406,551 + +0.6 1,406,559 + +0.8 1,406,560 - +0.6 1,406,560 - +0.4 1,406,560 - -0.7 1,406,560 - -0.2 1,406,560 - -0.2 1,406,574 - +0.9 1,406,682 - -1.7 1,406,742 + +0.0 1,406,742 + +1.1 1,406,742 + +0.3 1,406,742 + +0.3 1,406,742 + +0.5 1,406,743 - +1.2 1,406,835 + RR42_RS06420 0.18 -0.1 1,406,836 - RR42_RS06420 0.19 +0.7 1,406,985 + RR42_RS06420 0.41 +0.1 1,406,986 - RR42_RS06420 0.42 +0.2 1,406,986 - RR42_RS06420 0.42 -0.1 1,407,103 - RR42_RS06420 0.60 +0.2 1,407,139 + RR42_RS06420 0.65 -0.9 1,407,185 - RR42_RS06420 0.72 +0.4 1,407,185 - RR42_RS06420 0.72 -0.6 1,407,185 - RR42_RS06420 0.72 -1.4 1,407,367 - -0.0 1,407,668 - +1.0 1,407,756 + RR42_RS06425 0.16 +1.0 1,407,963 + RR42_RS06425 0.54 +1.5 1,407,964 - RR42_RS06425 0.54 +1.7 1,408,088 + RR42_RS06425 0.77 +0.4 1,408,088 + RR42_RS06425 0.77 +0.3 1,408,089 - RR42_RS06425 0.77 -0.6 1,408,089 - RR42_RS06425 0.77 -0.0 1,408,089 - RR42_RS06425 0.77 -0.7 1,408,089 - RR42_RS06425 0.77 +0.0 1,408,153 + RR42_RS06425 0.89 +0.0 1,408,154 - RR42_RS06425 0.89 +0.0 1,408,167 - -1.7 1,408,239 + +0.6 1,408,355 + RR42_RS06430 0.24 +1.1 1,408,356 - RR42_RS06430 0.25 +1.1
Or see this region's nucleotide sequence