Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05665 and RR42_RS05670 are separated by 28 nucleotides RR42_RS05670 and RR42_RS05675 overlap by 1 nucleotides RR42_RS05675 and RR42_RS05680 are separated by 9 nucleotides
RR42_RS05665: RR42_RS05665 - urease accessory protein UreJ, at 1,246,931 to 1,247,563
_RS05665
RR42_RS05670: RR42_RS05670 - urease subunit beta, at 1,247,592 to 1,247,897
_RS05670
RR42_RS05675: RR42_RS05675 - urease subunit alpha, at 1,247,897 to 1,249,615
_RS05675
RR42_RS05680: RR42_RS05680 - urease accessory protein UreE, at 1,249,625 to 1,250,260
_RS05680
Position (kb) 1247
1248
1249
1250 Strain fitness (log2 ratio) -1
0
1
2 at 1247.418 kb on - strand, within RR42_RS05665 at 1247.778 kb on - strand, within RR42_RS05670 at 1247.863 kb on - strand, within RR42_RS05670 at 1248.643 kb on + strand, within RR42_RS05675 at 1248.643 kb on + strand, within RR42_RS05675 at 1248.706 kb on + strand, within RR42_RS05675 at 1248.706 kb on + strand, within RR42_RS05675 at 1248.706 kb on + strand, within RR42_RS05675 at 1248.707 kb on - strand, within RR42_RS05675 at 1248.710 kb on + strand, within RR42_RS05675 at 1248.711 kb on - strand, within RR42_RS05675 at 1248.759 kb on + strand, within RR42_RS05675 at 1248.809 kb on + strand, within RR42_RS05675 at 1248.810 kb on - strand, within RR42_RS05675 at 1248.810 kb on - strand, within RR42_RS05675 at 1248.810 kb on - strand, within RR42_RS05675 at 1249.118 kb on + strand, within RR42_RS05675 at 1249.910 kb on + strand, within RR42_RS05680 at 1249.911 kb on - strand, within RR42_RS05680 at 1249.944 kb on + strand, within RR42_RS05680 at 1250.011 kb on - strand, within RR42_RS05680 at 1250.105 kb on + strand, within RR42_RS05680 at 1250.105 kb on + strand, within RR42_RS05680 at 1250.431 kb on + strand at 1250.496 kb on + strand at 1250.607 kb on + strand at 1250.607 kb on + strand at 1250.607 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 1,247,418 - RR42_RS05665 0.77 +0.6 1,247,778 - RR42_RS05670 0.61 +0.4 1,247,863 - RR42_RS05670 0.89 +2.6 1,248,643 + RR42_RS05675 0.43 +0.9 1,248,643 + RR42_RS05675 0.43 -1.3 1,248,706 + RR42_RS05675 0.47 +1.7 1,248,706 + RR42_RS05675 0.47 -1.3 1,248,706 + RR42_RS05675 0.47 -1.2 1,248,707 - RR42_RS05675 0.47 +0.1 1,248,710 + RR42_RS05675 0.47 -0.5 1,248,711 - RR42_RS05675 0.47 -1.4 1,248,759 + RR42_RS05675 0.50 +1.4 1,248,809 + RR42_RS05675 0.53 +0.9 1,248,810 - RR42_RS05675 0.53 +0.6 1,248,810 - RR42_RS05675 0.53 +1.1 1,248,810 - RR42_RS05675 0.53 +0.2 1,249,118 + RR42_RS05675 0.71 +0.6 1,249,910 + RR42_RS05680 0.45 +0.2 1,249,911 - RR42_RS05680 0.45 +1.8 1,249,944 + RR42_RS05680 0.50 -1.4 1,250,011 - RR42_RS05680 0.61 -0.0 1,250,105 + RR42_RS05680 0.75 -0.4 1,250,105 + RR42_RS05680 0.75 -1.6 1,250,431 + -0.4 1,250,496 + +0.3 1,250,607 + -0.6 1,250,607 + -0.7 1,250,607 + -1.1
Or see this region's nucleotide sequence