Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04350 and RR42_RS04355 are separated by 116 nucleotides RR42_RS04355 and RR42_RS04360 are separated by 157 nucleotides
RR42_RS04350: RR42_RS04350 - ABC transporter ATP-binding protein, at 966,855 to 967,916
_RS04350
RR42_RS04355: RR42_RS04355 - recombination factor protein RarA, at 968,033 to 969,400
_RS04355
RR42_RS04360: RR42_RS04360 - seryl-tRNA synthetase, at 969,558 to 970,871
_RS04360
Position (kb) 968
969
970 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 967.132 kb on - strand, within RR42_RS04350 at 967.132 kb on - strand, within RR42_RS04350 at 967.532 kb on + strand, within RR42_RS04350 at 967.532 kb on + strand, within RR42_RS04350 at 967.539 kb on + strand, within RR42_RS04350 at 967.649 kb on + strand, within RR42_RS04350 at 967.649 kb on + strand, within RR42_RS04350 at 967.650 kb on - strand, within RR42_RS04350 at 967.650 kb on - strand, within RR42_RS04350 at 967.789 kb on - strand, within RR42_RS04350 at 967.949 kb on + strand at 967.949 kb on + strand at 967.950 kb on - strand at 967.950 kb on - strand at 967.950 kb on - strand at 968.005 kb on + strand at 968.006 kb on - strand at 968.017 kb on + strand at 968.325 kb on - strand, within RR42_RS04355 at 968.502 kb on - strand, within RR42_RS04355 at 968.502 kb on - strand, within RR42_RS04355 at 968.765 kb on + strand, within RR42_RS04355 at 968.765 kb on + strand, within RR42_RS04355 at 968.825 kb on + strand, within RR42_RS04355 at 968.825 kb on + strand, within RR42_RS04355 at 968.826 kb on - strand, within RR42_RS04355 at 968.960 kb on + strand, within RR42_RS04355 at 969.014 kb on + strand, within RR42_RS04355 at 969.047 kb on + strand, within RR42_RS04355 at 969.057 kb on - strand, within RR42_RS04355 at 969.057 kb on - strand, within RR42_RS04355 at 969.194 kb on + strand, within RR42_RS04355 at 969.194 kb on + strand, within RR42_RS04355 at 969.195 kb on - strand, within RR42_RS04355 at 969.195 kb on - strand, within RR42_RS04355 at 969.195 kb on - strand, within RR42_RS04355 at 969.212 kb on + strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.245 kb on + strand, within RR42_RS04355 at 969.246 kb on - strand, within RR42_RS04355 at 969.398 kb on + strand at 969.398 kb on + strand at 969.398 kb on + strand at 969.398 kb on + strand at 969.398 kb on + strand at 969.399 kb on - strand at 969.399 kb on - strand at 969.501 kb on + strand at 969.501 kb on + strand at 969.502 kb on - strand at 969.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 967,132 - RR42_RS04350 0.26 +0.1 967,132 - RR42_RS04350 0.26 +0.6 967,532 + RR42_RS04350 0.64 +1.1 967,532 + RR42_RS04350 0.64 +1.3 967,539 + RR42_RS04350 0.64 +1.3 967,649 + RR42_RS04350 0.75 +1.5 967,649 + RR42_RS04350 0.75 -0.1 967,650 - RR42_RS04350 0.75 +1.1 967,650 - RR42_RS04350 0.75 +0.3 967,789 - RR42_RS04350 0.88 -0.0 967,949 + -0.8 967,949 + +1.8 967,950 - -0.9 967,950 - -1.3 967,950 - -0.9 968,005 + -0.2 968,006 - -0.4 968,017 + -0.1 968,325 - RR42_RS04355 0.21 +2.3 968,502 - RR42_RS04355 0.34 -0.1 968,502 - RR42_RS04355 0.34 -0.6 968,765 + RR42_RS04355 0.54 -1.2 968,765 + RR42_RS04355 0.54 +0.3 968,825 + RR42_RS04355 0.58 +0.4 968,825 + RR42_RS04355 0.58 +0.7 968,826 - RR42_RS04355 0.58 +0.1 968,960 + RR42_RS04355 0.68 +0.5 969,014 + RR42_RS04355 0.72 +1.1 969,047 + RR42_RS04355 0.74 +0.5 969,057 - RR42_RS04355 0.75 -2.2 969,057 - RR42_RS04355 0.75 +0.7 969,194 + RR42_RS04355 0.85 +0.8 969,194 + RR42_RS04355 0.85 -0.8 969,195 - RR42_RS04355 0.85 +0.0 969,195 - RR42_RS04355 0.85 -1.2 969,195 - RR42_RS04355 0.85 +1.0 969,212 + RR42_RS04355 0.86 -0.4 969,213 - RR42_RS04355 0.86 +1.4 969,213 - RR42_RS04355 0.86 -0.4 969,213 - RR42_RS04355 0.86 +0.8 969,213 - RR42_RS04355 0.86 +0.6 969,213 - RR42_RS04355 0.86 +0.8 969,245 + RR42_RS04355 0.89 +0.6 969,246 - RR42_RS04355 0.89 +0.1 969,398 + -1.7 969,398 + -0.2 969,398 + +1.8 969,398 + +0.8 969,398 + -1.7 969,399 - +1.2 969,399 - +1.2 969,501 + +0.1 969,501 + -0.5 969,502 - -0.1 969,502 - +2.9
Or see this region's nucleotide sequence