Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03990 and RR42_RS03995 are separated by 577 nucleotides RR42_RS03995 and RR42_RS04000 are separated by 631 nucleotides
RR42_RS03990: RR42_RS03990 - aspartate:proton symporter Glt <small>(from data)</small>, at 881,471 to 882,781
_RS03990
RR42_RS03995: RR42_RS03995 - diguanylate cyclase, at 883,359 to 886,721
_RS03995
RR42_RS04000: RR42_RS04000 - (2Fe-2S)-binding protein, at 887,353 to 887,811
_RS04000
Position (kb) 883
884
885
886
887 Strain fitness (log2 ratio) -2
-1
0
1
2 at 883.086 kb on + strand at 883.086 kb on + strand at 883.110 kb on - strand at 883.432 kb on + strand at 883.432 kb on + strand at 883.432 kb on + strand at 883.433 kb on - strand at 883.433 kb on - strand at 883.433 kb on - strand at 883.444 kb on + strand at 883.445 kb on - strand at 883.612 kb on + strand at 883.612 kb on + strand at 883.613 kb on - strand at 883.954 kb on + strand, within RR42_RS03995 at 884.218 kb on + strand, within RR42_RS03995 at 884.218 kb on + strand, within RR42_RS03995 at 884.219 kb on - strand at 884.219 kb on - strand, within RR42_RS03995 at 884.226 kb on + strand, within RR42_RS03995 at 884.308 kb on + strand, within RR42_RS03995 at 884.462 kb on - strand, within RR42_RS03995 at 884.885 kb on + strand, within RR42_RS03995 at 884.886 kb on - strand, within RR42_RS03995 at 885.042 kb on - strand, within RR42_RS03995 at 885.402 kb on + strand, within RR42_RS03995 at 885.489 kb on + strand, within RR42_RS03995 at 885.490 kb on - strand, within RR42_RS03995 at 885.566 kb on - strand, within RR42_RS03995 at 885.605 kb on - strand, within RR42_RS03995 at 885.716 kb on - strand, within RR42_RS03995 at 885.985 kb on - strand, within RR42_RS03995 at 886.075 kb on + strand, within RR42_RS03995 at 886.075 kb on + strand, within RR42_RS03995 at 886.075 kb on + strand, within RR42_RS03995 at 886.075 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.179 kb on + strand, within RR42_RS03995 at 886.262 kb on - strand, within RR42_RS03995 at 886.369 kb on - strand, within RR42_RS03995 at 886.633 kb on - strand at 886.656 kb on + strand at 886.656 kb on + strand at 886.801 kb on - strand at 886.801 kb on - strand at 886.811 kb on + strand at 886.811 kb on + strand at 886.811 kb on + strand at 886.812 kb on - strand at 886.812 kb on - strand at 886.814 kb on - strand at 886.844 kb on - strand at 886.981 kb on + strand at 886.982 kb on - strand at 886.999 kb on - strand at 887.211 kb on + strand at 887.211 kb on + strand at 887.212 kb on - strand at 887.227 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.364 kb on - strand at 887.364 kb on - strand at 887.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 883,086 + +2.3 883,086 + +1.3 883,110 - +1.7 883,432 + -1.5 883,432 + +0.2 883,432 + +0.6 883,433 - +1.1 883,433 - -1.8 883,433 - +0.1 883,444 + -1.5 883,445 - -2.2 883,612 + +2.0 883,612 + -1.0 883,613 - -1.0 883,954 + RR42_RS03995 0.18 +0.7 884,218 + RR42_RS03995 0.26 -0.3 884,218 + RR42_RS03995 0.26 -0.4 884,219 - -0.3 884,219 - RR42_RS03995 0.26 -0.2 884,226 + RR42_RS03995 0.26 +0.2 884,308 + RR42_RS03995 0.28 -0.0 884,462 - RR42_RS03995 0.33 +0.5 884,885 + RR42_RS03995 0.45 +0.2 884,886 - RR42_RS03995 0.45 -1.2 885,042 - RR42_RS03995 0.50 +0.8 885,402 + RR42_RS03995 0.61 +1.3 885,489 + RR42_RS03995 0.63 +0.3 885,490 - RR42_RS03995 0.63 -0.8 885,566 - RR42_RS03995 0.66 -0.2 885,605 - RR42_RS03995 0.67 +1.0 885,716 - RR42_RS03995 0.70 +0.3 885,985 - RR42_RS03995 0.78 -1.0 886,075 + RR42_RS03995 0.81 +1.4 886,075 + RR42_RS03995 0.81 +0.8 886,075 + RR42_RS03995 0.81 -0.7 886,075 - RR42_RS03995 0.81 -0.6 886,076 - RR42_RS03995 0.81 -0.5 886,076 - RR42_RS03995 0.81 -0.2 886,076 - RR42_RS03995 0.81 +0.9 886,076 - RR42_RS03995 0.81 -0.2 886,076 - RR42_RS03995 0.81 -2.5 886,076 - RR42_RS03995 0.81 -1.5 886,179 + RR42_RS03995 0.84 +2.0 886,262 - RR42_RS03995 0.86 -0.3 886,369 - RR42_RS03995 0.90 -0.3 886,633 - -0.6 886,656 + -1.3 886,656 + -1.0 886,801 - +1.4 886,801 - -1.6 886,811 + -1.7 886,811 + +0.3 886,811 + -1.3 886,812 - -0.5 886,812 - -0.2 886,814 - -0.0 886,844 - -0.4 886,981 + -0.1 886,982 - -0.2 886,999 - -0.2 887,211 + -1.0 887,211 + -0.7 887,212 - +0.2 887,227 + +0.2 887,363 + -2.3 887,363 + -2.4 887,363 + -0.7 887,363 + -1.4 887,363 + -0.4 887,363 + -0.7 887,364 - -0.3 887,364 - -0.6 887,367 + +0.3
Or see this region's nucleotide sequence