Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03985 and RR42_RS03990 are separated by 274 nucleotides RR42_RS03990 and RR42_RS03995 are separated by 577 nucleotides
RR42_RS03985: RR42_RS03985 - histidine kinase, at 879,280 to 881,196
_RS03985
RR42_RS03990: RR42_RS03990 - aspartate:proton symporter Glt <small>(from data)</small>, at 881,471 to 882,781
_RS03990
RR42_RS03995: RR42_RS03995 - diguanylate cyclase, at 883,359 to 886,721
_RS03995
Position (kb) 881
882
883 Strain fitness (log2 ratio) -2
-1
0
1
2 at 880.649 kb on + strand, within RR42_RS03985 at 880.649 kb on + strand, within RR42_RS03985 at 880.650 kb on - strand, within RR42_RS03985 at 880.650 kb on - strand, within RR42_RS03985 at 880.650 kb on - strand, within RR42_RS03985 at 880.653 kb on - strand, within RR42_RS03985 at 880.685 kb on + strand, within RR42_RS03985 at 880.686 kb on - strand, within RR42_RS03985 at 880.686 kb on - strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.754 kb on + strand, within RR42_RS03985 at 880.755 kb on - strand, within RR42_RS03985 at 880.856 kb on + strand, within RR42_RS03985 at 880.857 kb on - strand, within RR42_RS03985 at 880.857 kb on - strand, within RR42_RS03985 at 880.946 kb on + strand, within RR42_RS03985 at 880.947 kb on - strand, within RR42_RS03985 at 880.952 kb on + strand, within RR42_RS03985 at 880.986 kb on - strand, within RR42_RS03985 at 880.986 kb on - strand, within RR42_RS03985 at 881.039 kb on + strand at 881.040 kb on - strand at 881.040 kb on - strand at 881.040 kb on - strand at 881.272 kb on - strand at 881.272 kb on - strand at 881.296 kb on + strand at 881.296 kb on + strand at 881.297 kb on - strand at 881.297 kb on - strand at 881.297 kb on - strand at 881.298 kb on + strand at 881.325 kb on + strand at 881.326 kb on - strand at 881.388 kb on - strand at 881.389 kb on - strand at 881.473 kb on - strand at 881.473 kb on - strand at 881.473 kb on - strand at 881.847 kb on + strand, within RR42_RS03990 at 881.847 kb on + strand, within RR42_RS03990 at 881.847 kb on + strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 881.848 kb on - strand, within RR42_RS03990 at 882.046 kb on - strand, within RR42_RS03990 at 882.090 kb on + strand, within RR42_RS03990 at 882.198 kb on + strand, within RR42_RS03990 at 882.198 kb on + strand, within RR42_RS03990 at 882.198 kb on + strand, within RR42_RS03990 at 882.198 kb on + strand, within RR42_RS03990 at 882.199 kb on - strand, within RR42_RS03990 at 883.086 kb on + strand at 883.086 kb on + strand at 883.110 kb on - strand at 883.432 kb on + strand at 883.432 kb on + strand at 883.432 kb on + strand at 883.433 kb on - strand at 883.433 kb on - strand at 883.433 kb on - strand at 883.444 kb on + strand at 883.445 kb on - strand at 883.612 kb on + strand at 883.612 kb on + strand at 883.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 880,649 + RR42_RS03985 0.71 -0.4 880,649 + RR42_RS03985 0.71 +2.3 880,650 - RR42_RS03985 0.71 +0.5 880,650 - RR42_RS03985 0.71 +0.9 880,650 - RR42_RS03985 0.71 +1.1 880,653 - RR42_RS03985 0.72 +0.5 880,685 + RR42_RS03985 0.73 +0.2 880,686 - RR42_RS03985 0.73 -2.0 880,686 - RR42_RS03985 0.73 -1.2 880,754 + RR42_RS03985 0.77 +0.6 880,754 + RR42_RS03985 0.77 -0.7 880,754 + RR42_RS03985 0.77 -1.1 880,754 + RR42_RS03985 0.77 -0.4 880,754 + RR42_RS03985 0.77 +0.7 880,755 - RR42_RS03985 0.77 +1.1 880,856 + RR42_RS03985 0.82 +0.5 880,857 - RR42_RS03985 0.82 -0.5 880,857 - RR42_RS03985 0.82 +1.0 880,946 + RR42_RS03985 0.87 +0.9 880,947 - RR42_RS03985 0.87 +1.0 880,952 + RR42_RS03985 0.87 +1.8 880,986 - RR42_RS03985 0.89 -1.3 880,986 - RR42_RS03985 0.89 +0.3 881,039 + +0.3 881,040 - +0.0 881,040 - -1.3 881,040 - +0.3 881,272 - +1.2 881,272 - -2.2 881,296 + +0.2 881,296 + +1.4 881,297 - -0.7 881,297 - +0.6 881,297 - +1.0 881,298 + +0.3 881,325 + -0.7 881,326 - -1.2 881,388 - +0.3 881,389 - -0.7 881,473 - +0.6 881,473 - -0.9 881,473 - -1.0 881,847 + RR42_RS03990 0.29 +0.5 881,847 + RR42_RS03990 0.29 +1.4 881,847 + RR42_RS03990 0.29 -1.7 881,848 - RR42_RS03990 0.29 +0.4 881,848 - RR42_RS03990 0.29 +0.1 881,848 - RR42_RS03990 0.29 +1.3 881,848 - RR42_RS03990 0.29 +0.2 881,848 - RR42_RS03990 0.29 +1.0 882,046 - RR42_RS03990 0.44 -1.0 882,090 + RR42_RS03990 0.47 +0.2 882,198 + RR42_RS03990 0.55 -0.4 882,198 + RR42_RS03990 0.55 -0.2 882,198 + RR42_RS03990 0.55 +2.3 882,198 + RR42_RS03990 0.55 +0.4 882,199 - RR42_RS03990 0.56 +0.3 883,086 + +2.3 883,086 + +1.3 883,110 - +1.7 883,432 + -1.5 883,432 + +0.2 883,432 + +0.6 883,433 - +1.1 883,433 - -1.8 883,433 - +0.1 883,444 + -1.5 883,445 - -2.2 883,612 + +2.0 883,612 + -1.0 883,613 - -1.0
Or see this region's nucleotide sequence