Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03265

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03260 and RR42_RS03265 are separated by 161 nucleotidesRR42_RS03265 and RR42_RS03270 are separated by 354 nucleotidesRR42_RS03270 and RR42_RS03275 are separated by 94 nucleotides RR42_RS03260: RR42_RS03260 - branched-chain amino acid ABC transporter substrate-binding protein, at 721,953 to 723,071 _RS03260 RR42_RS03265: RR42_RS03265 - hypothetical protein, at 723,233 to 724,513 _RS03265 RR42_RS03270: RR42_RS03270 - membrane protein, at 724,868 to 725,077 _RS03270 RR42_RS03275: RR42_RS03275 - membrane protein, at 725,172 to 725,642 _RS03275 Position (kb) 723 724 725Strain fitness (log2 ratio) -2 -1 0 1 2 3at 722.242 kb on + strand, within RR42_RS03260at 722.384 kb on - strand, within RR42_RS03260at 722.528 kb on - strand, within RR42_RS03260at 722.704 kb on + strand, within RR42_RS03260at 722.705 kb on - strand, within RR42_RS03260at 722.906 kb on + strand, within RR42_RS03260at 722.907 kb on - strand, within RR42_RS03260at 722.907 kb on - strand, within RR42_RS03260at 722.907 kb on - strand, within RR42_RS03260at 722.908 kb on + strand, within RR42_RS03260at 723.195 kb on - strandat 723.195 kb on - strandat 723.234 kb on + strandat 723.285 kb on + strandat 723.286 kb on - strandat 723.463 kb on - strand, within RR42_RS03265at 723.519 kb on + strand, within RR42_RS03265at 723.520 kb on - strand, within RR42_RS03265at 723.520 kb on - strand, within RR42_RS03265at 723.599 kb on + strand, within RR42_RS03265at 723.654 kb on + strand, within RR42_RS03265at 723.654 kb on + strand, within RR42_RS03265at 723.655 kb on - strand, within RR42_RS03265at 723.655 kb on - strand, within RR42_RS03265at 723.918 kb on + strand, within RR42_RS03265at 723.918 kb on + strand, within RR42_RS03265at 723.919 kb on - strand, within RR42_RS03265at 723.988 kb on - strand, within RR42_RS03265at 724.138 kb on + strand, within RR42_RS03265at 724.139 kb on - strand, within RR42_RS03265at 724.293 kb on + strand, within RR42_RS03265at 724.293 kb on + strand, within RR42_RS03265at 724.293 kb on + strand, within RR42_RS03265at 724.294 kb on - strand, within RR42_RS03265at 724.294 kb on - strand, within RR42_RS03265at 724.294 kb on - strand, within RR42_RS03265at 724.297 kb on - strand, within RR42_RS03265at 724.442 kb on + strandat 724.442 kb on + strandat 724.442 kb on + strandat 724.755 kb on + strandat 724.755 kb on + strandat 724.756 kb on - strandat 724.756 kb on - strandat 724.756 kb on - strandat 724.764 kb on + strandat 724.764 kb on + strandat 724.765 kb on - strandat 724.765 kb on - strandat 724.765 kb on - strandat 724.765 kb on - strandat 724.874 kb on - strandat 724.879 kb on - strandat 724.888 kb on + strandat 724.888 kb on + strandat 725.166 kb on + strandat 725.166 kb on + strandat 725.167 kb on - strandat 725.167 kb on - strandat 725.167 kb on - strandat 725.167 kb on - strandat 725.187 kb on + strandat 725.281 kb on + strand, within RR42_RS03275at 725.290 kb on + strand, within RR42_RS03275at 725.290 kb on + strand, within RR42_RS03275at 725.290 kb on + strand, within RR42_RS03275at 725.290 kb on + strand, within RR42_RS03275at 725.290 kb on + strand, within RR42_RS03275at 725.290 kb on + strand, within RR42_RS03275at 725.291 kb on - strand, within RR42_RS03275at 725.291 kb on - strand, within RR42_RS03275at 725.291 kb on - strand, within RR42_RS03275at 725.479 kb on + strand, within RR42_RS03275at 725.480 kb on - strand, within RR42_RS03275

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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722,242 + RR42_RS03260 0.26 -0.4
722,384 - RR42_RS03260 0.39 -1.3
722,528 - RR42_RS03260 0.51 +1.1
722,704 + RR42_RS03260 0.67 +1.5
722,705 - RR42_RS03260 0.67 -0.3
722,906 + RR42_RS03260 0.85 +0.6
722,907 - RR42_RS03260 0.85 -0.3
722,907 - RR42_RS03260 0.85 +0.4
722,907 - RR42_RS03260 0.85 +0.4
722,908 + RR42_RS03260 0.85 +0.4
723,195 - -0.8
723,195 - -0.2
723,234 + +0.4
723,285 + +0.5
723,286 - -0.2
723,463 - RR42_RS03265 0.18 +1.0
723,519 + RR42_RS03265 0.22 +0.4
723,520 - RR42_RS03265 0.22 +1.2
723,520 - RR42_RS03265 0.22 -0.2
723,599 + RR42_RS03265 0.29 +0.4
723,654 + RR42_RS03265 0.33 +0.4
723,654 + RR42_RS03265 0.33 +0.1
723,655 - RR42_RS03265 0.33 +1.0
723,655 - RR42_RS03265 0.33 +0.8
723,918 + RR42_RS03265 0.53 +0.6
723,918 + RR42_RS03265 0.53 +3.4
723,919 - RR42_RS03265 0.54 -1.6
723,988 - RR42_RS03265 0.59 -0.4
724,138 + RR42_RS03265 0.71 -1.4
724,139 - RR42_RS03265 0.71 -0.5
724,293 + RR42_RS03265 0.83 -1.2
724,293 + RR42_RS03265 0.83 +0.5
724,293 + RR42_RS03265 0.83 -0.8
724,294 - RR42_RS03265 0.83 -1.4
724,294 - RR42_RS03265 0.83 -0.5
724,294 - RR42_RS03265 0.83 -0.6
724,297 - RR42_RS03265 0.83 -1.0
724,442 + -0.6
724,442 + +0.5
724,442 + +0.8
724,755 + -0.2
724,755 + -0.7
724,756 - +0.8
724,756 - +0.5
724,756 - +1.1
724,764 + -1.2
724,764 + +0.8
724,765 - +0.6
724,765 - -0.1
724,765 - -0.5
724,765 - +1.0
724,874 - -1.0
724,879 - +1.1
724,888 + +2.0
724,888 + -1.6
725,166 + +0.0
725,166 + -0.8
725,167 - +1.3
725,167 - -1.0
725,167 - -0.5
725,167 - -0.3
725,187 + +0.8
725,281 + RR42_RS03275 0.23 -0.0
725,290 + RR42_RS03275 0.25 -1.6
725,290 + RR42_RS03275 0.25 -0.3
725,290 + RR42_RS03275 0.25 +0.1
725,290 + RR42_RS03275 0.25 +0.4
725,290 + RR42_RS03275 0.25 -0.4
725,290 + RR42_RS03275 0.25 +2.0
725,291 - RR42_RS03275 0.25 +0.4
725,291 - RR42_RS03275 0.25 +1.0
725,291 - RR42_RS03275 0.25 -2.0
725,479 + RR42_RS03275 0.65 +1.4
725,480 - RR42_RS03275 0.65 +0.0

Or see this region's nucleotide sequence