Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03080 and RR42_RS03085 are separated by 179 nucleotides RR42_RS03085 and RR42_RS03090 are separated by 327 nucleotides
RR42_RS03080: RR42_RS03080 - recombinase RecA, at 681,382 to 682,455
_RS03080
RR42_RS03085: RR42_RS03085 - RecX family transcriptional regulator, at 682,635 to 683,102
_RS03085
RR42_RS03090: RR42_RS03090 - hypothetical protein, at 683,430 to 684,104
_RS03090
Position (kb) 682
683
684 Strain fitness (log2 ratio) -2
-1
0
1
2 at 681.719 kb on - strand, within RR42_RS03080 at 682.164 kb on - strand, within RR42_RS03080 at 682.289 kb on - strand, within RR42_RS03080 at 682.333 kb on + strand, within RR42_RS03080 at 682.555 kb on - strand at 682.564 kb on + strand at 682.564 kb on + strand at 682.567 kb on - strand at 682.567 kb on - strand at 682.568 kb on + strand at 682.569 kb on - strand at 682.569 kb on - strand at 682.569 kb on - strand at 682.569 kb on - strand at 682.577 kb on + strand at 682.577 kb on + strand at 682.580 kb on - strand at 682.591 kb on - strand at 682.591 kb on - strand at 682.592 kb on + strand at 682.592 kb on + strand at 682.592 kb on + strand at 682.593 kb on - strand at 682.593 kb on - strand at 682.593 kb on - strand at 682.594 kb on + strand at 682.594 kb on + strand at 682.595 kb on - strand at 682.595 kb on - strand at 682.595 kb on - strand at 682.680 kb on + strand at 682.680 kb on + strand at 682.681 kb on - strand at 682.845 kb on + strand, within RR42_RS03085 at 683.162 kb on + strand at 683.162 kb on + strand at 683.162 kb on + strand at 683.162 kb on + strand at 683.162 kb on + strand at 683.162 kb on + strand at 683.163 kb on - strand at 683.163 kb on - strand at 683.194 kb on + strand at 683.215 kb on + strand at 683.215 kb on + strand at 683.374 kb on - strand at 683.429 kb on + strand at 683.429 kb on + strand at 683.430 kb on - strand at 683.493 kb on + strand at 683.493 kb on + strand at 683.494 kb on - strand at 683.498 kb on + strand, within RR42_RS03090 at 683.498 kb on + strand, within RR42_RS03090 at 683.499 kb on - strand, within RR42_RS03090 at 683.512 kb on + strand, within RR42_RS03090 at 683.578 kb on + strand, within RR42_RS03090 at 683.818 kb on + strand, within RR42_RS03090 at 683.894 kb on + strand, within RR42_RS03090 at 683.894 kb on + strand, within RR42_RS03090 at 683.907 kb on + strand, within RR42_RS03090 at 683.907 kb on + strand, within RR42_RS03090 at 683.907 kb on + strand, within RR42_RS03090 at 683.953 kb on + strand, within RR42_RS03090 at 683.953 kb on + strand, within RR42_RS03090 at 683.976 kb on + strand, within RR42_RS03090
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 681,719 - RR42_RS03080 0.31 +1.4 682,164 - RR42_RS03080 0.73 -2.4 682,289 - RR42_RS03080 0.84 -2.7 682,333 + RR42_RS03080 0.89 -1.5 682,555 - +1.1 682,564 + -1.5 682,564 + +0.4 682,567 - +0.0 682,567 - -0.3 682,568 + +0.4 682,569 - +1.1 682,569 - -1.7 682,569 - -0.7 682,569 - +0.0 682,577 + -0.7 682,577 + -0.7 682,580 - -0.6 682,591 - +0.8 682,591 - -0.2 682,592 + +0.3 682,592 + -0.2 682,592 + -0.7 682,593 - +0.9 682,593 - -0.5 682,593 - -1.2 682,594 + -2.7 682,594 + -0.6 682,595 - -0.6 682,595 - +0.6 682,595 - -2.4 682,680 + -0.5 682,680 + -1.3 682,681 - +2.0 682,845 + RR42_RS03085 0.45 -0.9 683,162 + -0.9 683,162 + +1.1 683,162 + +0.9 683,162 + +0.7 683,162 + -0.9 683,162 + -0.8 683,163 - -0.2 683,163 - -0.3 683,194 + +0.9 683,215 + +1.3 683,215 + +0.4 683,374 - +1.8 683,429 + +0.5 683,429 + -1.1 683,430 - -2.3 683,493 + +0.5 683,493 + -1.3 683,494 - +0.1 683,498 + RR42_RS03090 0.10 -0.2 683,498 + RR42_RS03090 0.10 -0.3 683,499 - RR42_RS03090 0.10 +1.2 683,512 + RR42_RS03090 0.12 +0.1 683,578 + RR42_RS03090 0.22 -0.7 683,818 + RR42_RS03090 0.57 -0.2 683,894 + RR42_RS03090 0.69 -1.4 683,894 + RR42_RS03090 0.69 -0.2 683,907 + RR42_RS03090 0.71 +1.0 683,907 + RR42_RS03090 0.71 -0.7 683,907 + RR42_RS03090 0.71 -2.1 683,953 + RR42_RS03090 0.77 -0.8 683,953 + RR42_RS03090 0.77 -1.6 683,976 + RR42_RS03090 0.81 +0.1
Or see this region's nucleotide sequence