Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02870 and RR42_RS02875 are separated by 33 nucleotides RR42_RS02875 and RR42_RS02880 are separated by 30 nucleotides
RR42_RS02870: RR42_RS02870 - RNA helicase, at 640,138 to 641,826
_RS02870
RR42_RS02875: RR42_RS02875 - serine/threonine protein kinase, at 641,860 to 642,921
_RS02875
RR42_RS02880: RR42_RS02880 - universal stress protein UspA, at 642,952 to 643,389
_RS02880
Position (kb) 641
642
643 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 641.107 kb on + strand, within RR42_RS02870 at 641.107 kb on + strand, within RR42_RS02870 at 641.108 kb on - strand, within RR42_RS02870 at 641.108 kb on - strand, within RR42_RS02870 at 641.108 kb on - strand, within RR42_RS02870 at 641.134 kb on + strand, within RR42_RS02870 at 641.134 kb on + strand, within RR42_RS02870 at 641.135 kb on - strand, within RR42_RS02870 at 641.135 kb on - strand, within RR42_RS02870 at 641.824 kb on + strand at 641.858 kb on + strand at 641.858 kb on + strand at 641.858 kb on + strand at 641.859 kb on - strand at 641.932 kb on + strand at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.016 kb on - strand, within RR42_RS02875 at 642.016 kb on - strand, within RR42_RS02875 at 642.016 kb on - strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.020 kb on - strand, within RR42_RS02875 at 642.020 kb on - strand, within RR42_RS02875 at 642.079 kb on + strand, within RR42_RS02875 at 642.271 kb on - strand, within RR42_RS02875 at 642.331 kb on + strand, within RR42_RS02875 at 642.405 kb on + strand, within RR42_RS02875 at 642.405 kb on + strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.604 kb on - strand, within RR42_RS02875 at 642.697 kb on + strand, within RR42_RS02875 at 642.698 kb on - strand, within RR42_RS02875 at 642.953 kb on + strand at 642.954 kb on - strand at 642.982 kb on + strand at 643.100 kb on + strand, within RR42_RS02880 at 643.101 kb on - strand, within RR42_RS02880 at 643.252 kb on + strand, within RR42_RS02880 at 643.252 kb on + strand, within RR42_RS02880 at 643.252 kb on + strand, within RR42_RS02880 at 643.253 kb on - strand, within RR42_RS02880 at 643.253 kb on - strand, within RR42_RS02880 at 643.253 kb on - strand, within RR42_RS02880 at 643.405 kb on + strand at 643.405 kb on + strand at 643.406 kb on - strand at 643.466 kb on + strand at 643.466 kb on + strand at 643.467 kb on - strand at 643.633 kb on + strand at 643.634 kb on - strand at 643.634 kb on - strand at 643.644 kb on + strand at 643.653 kb on + strand at 643.688 kb on + strand at 643.688 kb on + strand at 643.688 kb on + strand at 643.688 kb on + strand at 643.689 kb on - strand at 643.689 kb on - strand at 643.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 641,107 + RR42_RS02870 0.57 +1.2 641,107 + RR42_RS02870 0.57 +0.5 641,108 - RR42_RS02870 0.57 +1.0 641,108 - RR42_RS02870 0.57 +0.5 641,108 - RR42_RS02870 0.57 +1.3 641,134 + RR42_RS02870 0.59 -0.3 641,134 + RR42_RS02870 0.59 +0.2 641,135 - RR42_RS02870 0.59 +1.5 641,135 - RR42_RS02870 0.59 -2.2 641,824 + -0.4 641,858 + -0.1 641,858 + -1.6 641,858 + -1.8 641,859 - -1.5 641,932 + -0.9 642,015 + RR42_RS02875 0.15 +0.7 642,015 + RR42_RS02875 0.15 -0.4 642,015 + RR42_RS02875 0.15 -1.8 642,015 + RR42_RS02875 0.15 +1.1 642,015 + RR42_RS02875 0.15 +0.2 642,015 + RR42_RS02875 0.15 -0.5 642,015 + RR42_RS02875 0.15 +0.6 642,016 - RR42_RS02875 0.15 -0.5 642,016 - RR42_RS02875 0.15 -0.8 642,016 - RR42_RS02875 0.15 +1.4 642,019 + RR42_RS02875 0.15 -0.5 642,019 + RR42_RS02875 0.15 +0.2 642,019 + RR42_RS02875 0.15 -1.6 642,019 + RR42_RS02875 0.15 +0.1 642,019 + RR42_RS02875 0.15 -0.0 642,019 + RR42_RS02875 0.15 +0.8 642,020 - RR42_RS02875 0.15 +0.4 642,020 - RR42_RS02875 0.15 -1.3 642,079 + RR42_RS02875 0.21 -0.6 642,271 - RR42_RS02875 0.39 -0.6 642,331 + RR42_RS02875 0.44 +0.7 642,405 + RR42_RS02875 0.51 -1.1 642,405 + RR42_RS02875 0.51 +2.0 642,406 - RR42_RS02875 0.51 +1.2 642,406 - RR42_RS02875 0.51 +0.2 642,406 - RR42_RS02875 0.51 +0.8 642,406 - RR42_RS02875 0.51 -0.3 642,406 - RR42_RS02875 0.51 -0.1 642,604 - RR42_RS02875 0.70 +0.7 642,697 + RR42_RS02875 0.79 -0.6 642,698 - RR42_RS02875 0.79 -0.1 642,953 + -0.1 642,954 - +0.9 642,982 + +0.9 643,100 + RR42_RS02880 0.34 +0.6 643,101 - RR42_RS02880 0.34 +4.4 643,252 + RR42_RS02880 0.68 +1.1 643,252 + RR42_RS02880 0.68 -1.6 643,252 + RR42_RS02880 0.68 -0.6 643,253 - RR42_RS02880 0.69 +0.2 643,253 - RR42_RS02880 0.69 +1.7 643,253 - RR42_RS02880 0.69 +1.5 643,405 + +0.1 643,405 + -0.4 643,406 - +0.0 643,466 + -0.9 643,466 + -0.4 643,467 - -1.4 643,633 + +0.7 643,634 - +0.1 643,634 - -0.6 643,644 + +0.2 643,653 + +0.7 643,688 + +1.1 643,688 + +0.7 643,688 + +0.5 643,688 + -0.5 643,689 - -0.6 643,689 - -1.8 643,871 - -1.6
Or see this region's nucleotide sequence