Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02340 and RR42_RS02345 overlap by 28 nucleotides RR42_RS02345 and RR42_RS02350 overlap by 10 nucleotides RR42_RS02350 and RR42_RS02355 are separated by 3 nucleotides
RR42_RS02340: RR42_RS02340 - lipoprotein, at 524,831 to 525,859
_RS02340
RR42_RS02345: RR42_RS02345 - carbon monoxide dehydrogenase, at 525,832 to 526,413
_RS02345
RR42_RS02350: RR42_RS02350 - VWA domain-containing protein, at 526,404 to 527,699
_RS02350
RR42_RS02355: RR42_RS02355 - ATPase, at 527,703 to 528,599
_RS02355
Position (kb) 526
527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 525.615 kb on + strand, within RR42_RS02340 at 525.791 kb on + strand at 525.792 kb on - strand at 526.011 kb on + strand, within RR42_RS02345 at 526.012 kb on - strand, within RR42_RS02345 at 526.095 kb on - strand, within RR42_RS02345 at 526.193 kb on + strand, within RR42_RS02345 at 526.382 kb on - strand at 526.687 kb on - strand, within RR42_RS02350 at 526.957 kb on + strand, within RR42_RS02350 at 526.958 kb on - strand, within RR42_RS02350 at 526.958 kb on - strand, within RR42_RS02350 at 526.958 kb on - strand, within RR42_RS02350 at 526.975 kb on + strand, within RR42_RS02350 at 527.044 kb on + strand, within RR42_RS02350 at 527.539 kb on + strand, within RR42_RS02350 at 527.539 kb on + strand, within RR42_RS02350 at 527.539 kb on + strand, within RR42_RS02350 at 527.540 kb on - strand, within RR42_RS02350 at 527.776 kb on + strand at 527.777 kb on - strand at 528.004 kb on + strand, within RR42_RS02355 at 528.020 kb on - strand, within RR42_RS02355 at 528.283 kb on + strand, within RR42_RS02355 at 528.284 kb on - strand, within RR42_RS02355 at 528.352 kb on + strand, within RR42_RS02355 at 528.364 kb on + strand, within RR42_RS02355 at 528.394 kb on + strand, within RR42_RS02355 at 528.395 kb on - strand, within RR42_RS02355 at 528.514 kb on + strand at 528.547 kb on + strand at 528.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 525,615 + RR42_RS02340 0.76 +0.4 525,791 + -0.3 525,792 - -0.1 526,011 + RR42_RS02345 0.31 +0.1 526,012 - RR42_RS02345 0.31 +0.1 526,095 - RR42_RS02345 0.45 +2.0 526,193 + RR42_RS02345 0.62 -2.0 526,382 - -0.2 526,687 - RR42_RS02350 0.22 -0.5 526,957 + RR42_RS02350 0.43 -2.4 526,958 - RR42_RS02350 0.43 -2.1 526,958 - RR42_RS02350 0.43 -3.0 526,958 - RR42_RS02350 0.43 -1.7 526,975 + RR42_RS02350 0.44 +0.1 527,044 + RR42_RS02350 0.49 +0.0 527,539 + RR42_RS02350 0.88 -0.5 527,539 + RR42_RS02350 0.88 -1.2 527,539 + RR42_RS02350 0.88 -2.0 527,540 - RR42_RS02350 0.88 -0.4 527,776 + -0.1 527,777 - -0.7 528,004 + RR42_RS02355 0.34 +0.2 528,020 - RR42_RS02355 0.35 -0.1 528,283 + RR42_RS02355 0.65 -0.9 528,284 - RR42_RS02355 0.65 -1.5 528,352 + RR42_RS02355 0.72 -0.3 528,364 + RR42_RS02355 0.74 +0.5 528,394 + RR42_RS02355 0.77 -0.2 528,395 - RR42_RS02355 0.77 -0.1 528,514 + -0.6 528,547 + -0.4 528,547 + -1.5
Or see this region's nucleotide sequence