Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02325 and RR42_RS02330 are separated by 34 nucleotides RR42_RS02330 and RR42_RS02335 are separated by 14 nucleotides RR42_RS02335 and RR42_RS02340 are separated by 20 nucleotides
RR42_RS02325: RR42_RS02325 - glucoamylase, at 520,917 to 522,755
_RS02325
RR42_RS02330: RR42_RS02330 - trehalose-6-phosphate synthase, at 522,790 to 524,190
_RS02330
RR42_RS02335: RR42_RS02335 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 524,205 to 524,810
_RS02335
RR42_RS02340: RR42_RS02340 - lipoprotein, at 524,831 to 525,859
_RS02340
Position (kb) 522
523
524
525 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 521.829 kb on + strand, within RR42_RS02325 at 521.889 kb on + strand, within RR42_RS02325 at 522.010 kb on - strand, within RR42_RS02325 at 522.010 kb on - strand, within RR42_RS02325 at 522.019 kb on + strand, within RR42_RS02325 at 522.019 kb on + strand, within RR42_RS02325 at 522.019 kb on + strand, within RR42_RS02325 at 522.019 kb on + strand, within RR42_RS02325 at 522.085 kb on - strand, within RR42_RS02325 at 522.179 kb on + strand, within RR42_RS02325 at 522.179 kb on + strand, within RR42_RS02325 at 522.179 kb on + strand, within RR42_RS02325 at 522.264 kb on + strand, within RR42_RS02325 at 522.471 kb on + strand, within RR42_RS02325 at 522.471 kb on + strand, within RR42_RS02325 at 522.471 kb on + strand, within RR42_RS02325 at 522.472 kb on - strand, within RR42_RS02325 at 522.472 kb on - strand, within RR42_RS02325 at 522.472 kb on - strand, within RR42_RS02325 at 522.472 kb on - strand, within RR42_RS02325 at 522.473 kb on + strand, within RR42_RS02325 at 522.473 kb on + strand, within RR42_RS02325 at 522.474 kb on - strand, within RR42_RS02325 at 522.474 kb on - strand, within RR42_RS02325 at 522.474 kb on - strand, within RR42_RS02325 at 522.700 kb on + strand at 522.700 kb on + strand at 522.701 kb on - strand at 522.790 kb on - strand at 522.800 kb on + strand at 522.801 kb on - strand at 523.030 kb on + strand, within RR42_RS02330 at 523.034 kb on - strand, within RR42_RS02330 at 523.034 kb on - strand, within RR42_RS02330 at 523.042 kb on + strand, within RR42_RS02330 at 523.075 kb on + strand, within RR42_RS02330 at 523.121 kb on - strand, within RR42_RS02330 at 523.198 kb on + strand, within RR42_RS02330 at 523.269 kb on + strand, within RR42_RS02330 at 523.342 kb on + strand, within RR42_RS02330 at 523.433 kb on - strand, within RR42_RS02330 at 523.540 kb on + strand, within RR42_RS02330 at 523.541 kb on - strand, within RR42_RS02330 at 523.561 kb on + strand, within RR42_RS02330 at 523.562 kb on - strand, within RR42_RS02330 at 523.603 kb on + strand, within RR42_RS02330 at 523.726 kb on + strand, within RR42_RS02330 at 523.727 kb on - strand, within RR42_RS02330 at 523.781 kb on - strand, within RR42_RS02330 at 523.810 kb on + strand, within RR42_RS02330 at 523.962 kb on - strand, within RR42_RS02330 at 524.017 kb on + strand, within RR42_RS02330 at 524.022 kb on + strand, within RR42_RS02330 at 524.023 kb on - strand, within RR42_RS02330 at 524.061 kb on + strand at 524.062 kb on - strand at 524.062 kb on - strand at 524.062 kb on - strand at 524.062 kb on - strand at 524.146 kb on + strand at 524.146 kb on + strand at 524.147 kb on - strand at 524.147 kb on - strand at 524.181 kb on - strand at 524.224 kb on - strand at 524.658 kb on + strand, within RR42_RS02335 at 524.994 kb on + strand, within RR42_RS02340 at 524.994 kb on + strand, within RR42_RS02340 at 524.995 kb on - strand, within RR42_RS02340 at 525.105 kb on + strand, within RR42_RS02340 at 525.106 kb on - strand, within RR42_RS02340 at 525.106 kb on - strand, within RR42_RS02340
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 521,829 + RR42_RS02325 0.50 -2.0 521,889 + RR42_RS02325 0.53 +2.2 522,010 - RR42_RS02325 0.59 +1.3 522,010 - RR42_RS02325 0.59 -0.4 522,019 + RR42_RS02325 0.60 +0.4 522,019 + RR42_RS02325 0.60 +0.8 522,019 + RR42_RS02325 0.60 -0.7 522,019 + RR42_RS02325 0.60 -0.6 522,085 - RR42_RS02325 0.64 -0.7 522,179 + RR42_RS02325 0.69 -0.0 522,179 + RR42_RS02325 0.69 +0.4 522,179 + RR42_RS02325 0.69 -0.7 522,264 + RR42_RS02325 0.73 +0.2 522,471 + RR42_RS02325 0.85 -0.7 522,471 + RR42_RS02325 0.85 +1.7 522,471 + RR42_RS02325 0.85 -1.2 522,472 - RR42_RS02325 0.85 +0.0 522,472 - RR42_RS02325 0.85 -0.9 522,472 - RR42_RS02325 0.85 -0.3 522,472 - RR42_RS02325 0.85 -1.0 522,473 + RR42_RS02325 0.85 +0.6 522,473 + RR42_RS02325 0.85 -0.0 522,474 - RR42_RS02325 0.85 +0.1 522,474 - RR42_RS02325 0.85 -0.6 522,474 - RR42_RS02325 0.85 +0.6 522,700 + -0.9 522,700 + +2.1 522,701 - +0.3 522,790 - +0.4 522,800 + -0.0 522,801 - -1.3 523,030 + RR42_RS02330 0.17 +1.0 523,034 - RR42_RS02330 0.17 -0.1 523,034 - RR42_RS02330 0.17 -0.0 523,042 + RR42_RS02330 0.18 -0.9 523,075 + RR42_RS02330 0.20 -1.4 523,121 - RR42_RS02330 0.24 -3.6 523,198 + RR42_RS02330 0.29 +1.0 523,269 + RR42_RS02330 0.34 +0.3 523,342 + RR42_RS02330 0.39 -1.0 523,433 - RR42_RS02330 0.46 -0.6 523,540 + RR42_RS02330 0.54 +0.0 523,541 - RR42_RS02330 0.54 +0.6 523,561 + RR42_RS02330 0.55 -0.9 523,562 - RR42_RS02330 0.55 -1.3 523,603 + RR42_RS02330 0.58 -0.1 523,726 + RR42_RS02330 0.67 -0.4 523,727 - RR42_RS02330 0.67 -1.7 523,781 - RR42_RS02330 0.71 +0.5 523,810 + RR42_RS02330 0.73 -0.2 523,962 - RR42_RS02330 0.84 +0.6 524,017 + RR42_RS02330 0.88 +0.6 524,022 + RR42_RS02330 0.88 +0.3 524,023 - RR42_RS02330 0.88 -0.3 524,061 + +0.1 524,062 - +0.0 524,062 - +1.1 524,062 - +0.2 524,062 - -0.2 524,146 + +1.2 524,146 + -1.3 524,147 - -1.9 524,147 - -0.6 524,181 - -2.4 524,224 - +0.1 524,658 + RR42_RS02335 0.75 -1.7 524,994 + RR42_RS02340 0.16 -1.0 524,994 + RR42_RS02340 0.16 -0.8 524,995 - RR42_RS02340 0.16 +1.2 525,105 + RR42_RS02340 0.27 -0.8 525,106 - RR42_RS02340 0.27 -0.1 525,106 - RR42_RS02340 0.27 -0.2
Or see this region's nucleotide sequence