Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01955 and RR42_RS01960 are separated by 362 nucleotides RR42_RS01960 and RR42_RS01965 are separated by 208 nucleotides RR42_RS01965 and RR42_RS01970 are separated by 7 nucleotides
RR42_RS01955: RR42_RS01955 - nitrate transporter, at 437,726 to 439,045
_RS01955
RR42_RS01960: RR42_RS01960 - transcriptional regulator, at 439,408 to 440,061
_RS01960
RR42_RS01965: RR42_RS01965 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 440,270 to 440,971
_RS01965
RR42_RS01970: RR42_RS01970 - maleylacetoacetate isomerase, at 440,979 to 441,623
_RS01970
Position (kb) 439
440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 438.444 kb on + strand, within RR42_RS01955 at 438.445 kb on - strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.448 kb on - strand, within RR42_RS01955 at 438.495 kb on + strand, within RR42_RS01955 at 438.657 kb on + strand, within RR42_RS01955 at 438.657 kb on + strand, within RR42_RS01955 at 438.657 kb on + strand, within RR42_RS01955 at 438.657 kb on + strand, within RR42_RS01955 at 438.657 kb on + strand, within RR42_RS01955 at 438.658 kb on - strand, within RR42_RS01955 at 438.658 kb on - strand, within RR42_RS01955 at 438.658 kb on - strand, within RR42_RS01955 at 438.658 kb on - strand, within RR42_RS01955 at 438.658 kb on - strand, within RR42_RS01955 at 438.658 kb on - strand, within RR42_RS01955 at 438.670 kb on - strand, within RR42_RS01955 at 438.762 kb on + strand, within RR42_RS01955 at 438.762 kb on + strand, within RR42_RS01955 at 438.763 kb on - strand, within RR42_RS01955 at 438.763 kb on - strand, within RR42_RS01955 at 438.763 kb on - strand, within RR42_RS01955 at 438.763 kb on - strand, within RR42_RS01955 at 438.763 kb on - strand, within RR42_RS01955 at 438.887 kb on + strand, within RR42_RS01955 at 439.167 kb on + strand at 439.168 kb on - strand at 439.168 kb on - strand at 439.409 kb on + strand at 439.409 kb on + strand at 439.410 kb on - strand at 439.490 kb on + strand, within RR42_RS01960 at 439.490 kb on + strand, within RR42_RS01960 at 439.490 kb on + strand, within RR42_RS01960 at 439.490 kb on + strand, within RR42_RS01960 at 439.490 kb on + strand, within RR42_RS01960 at 439.491 kb on - strand, within RR42_RS01960 at 439.491 kb on - strand, within RR42_RS01960 at 439.625 kb on + strand, within RR42_RS01960 at 439.679 kb on + strand, within RR42_RS01960 at 439.679 kb on + strand, within RR42_RS01960 at 439.680 kb on - strand, within RR42_RS01960 at 439.680 kb on - strand, within RR42_RS01960 at 440.119 kb on + strand at 440.120 kb on - strand at 440.120 kb on - strand at 440.120 kb on - strand at 440.177 kb on + strand at 440.177 kb on + strand at 440.177 kb on + strand at 440.177 kb on + strand at 440.178 kb on - strand at 440.178 kb on - strand at 440.178 kb on - strand at 440.178 kb on - strand at 440.178 kb on - strand at 440.178 kb on - strand at 440.182 kb on + strand at 440.183 kb on - strand at 440.183 kb on - strand at 440.183 kb on - strand at 440.183 kb on - strand at 440.183 kb on - strand at 440.236 kb on + strand at 440.236 kb on + strand at 440.237 kb on - strand at 440.237 kb on - strand at 440.242 kb on - strand at 440.242 kb on - strand at 440.253 kb on + strand at 440.253 kb on + strand at 440.253 kb on + strand at 440.253 kb on + strand at 440.253 kb on + strand at 440.253 kb on + strand at 440.253 kb on + strand at 440.253 kb on + strand at 440.253 kb on + strand at 440.254 kb on - strand at 440.254 kb on - strand at 440.254 kb on - strand at 440.283 kb on + strand at 440.283 kb on + strand at 440.283 kb on + strand at 440.284 kb on - strand at 440.284 kb on - strand at 440.354 kb on + strand, within RR42_RS01965 at 440.372 kb on + strand, within RR42_RS01965 at 440.456 kb on + strand, within RR42_RS01965 at 440.456 kb on + strand, within RR42_RS01965 at 440.456 kb on + strand, within RR42_RS01965 at 440.456 kb on + strand, within RR42_RS01965 at 440.456 kb on + strand, within RR42_RS01965 at 440.456 kb on + strand, within RR42_RS01965 at 440.456 kb on + strand, within RR42_RS01965 at 440.456 kb on + strand, within RR42_RS01965 at 440.516 kb on + strand, within RR42_RS01965 at 440.517 kb on - strand, within RR42_RS01965 at 440.831 kb on + strand, within RR42_RS01965 at 440.831 kb on + strand, within RR42_RS01965 at 440.831 kb on + strand, within RR42_RS01965 at 440.832 kb on - strand, within RR42_RS01965 at 440.873 kb on + strand, within RR42_RS01965 at 440.873 kb on + strand, within RR42_RS01965 at 440.873 kb on + strand, within RR42_RS01965 at 440.873 kb on + strand, within RR42_RS01965 at 440.873 kb on + strand, within RR42_RS01965 at 440.874 kb on - strand, within RR42_RS01965 at 440.874 kb on - strand, within RR42_RS01965 at 440.874 kb on - strand, within RR42_RS01965 at 440.964 kb on + strand at 440.964 kb on + strand at 440.964 kb on + strand at 440.965 kb on - strand at 440.965 kb on - strand at 440.988 kb on + strand at 440.989 kb on - strand at 440.995 kb on - strand at 440.995 kb on - strand at 441.054 kb on + strand, within RR42_RS01970 at 441.055 kb on - strand, within RR42_RS01970 at 441.055 kb on - strand, within RR42_RS01970 at 441.055 kb on - strand, within RR42_RS01970 at 441.060 kb on + strand, within RR42_RS01970 at 441.060 kb on + strand, within RR42_RS01970 at 441.061 kb on - strand, within RR42_RS01970 at 441.061 kb on - strand, within RR42_RS01970 at 441.061 kb on - strand, within RR42_RS01970
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 438,444 + RR42_RS01955 0.54 -0.7 438,445 - RR42_RS01955 0.54 -1.7 438,447 + RR42_RS01955 0.55 -0.8 438,447 + RR42_RS01955 0.55 -0.1 438,447 + RR42_RS01955 0.55 +0.4 438,447 + RR42_RS01955 0.55 +1.9 438,447 + RR42_RS01955 0.55 -0.2 438,447 + RR42_RS01955 0.55 +1.1 438,447 + RR42_RS01955 0.55 +0.4 438,448 - RR42_RS01955 0.55 +0.1 438,495 + RR42_RS01955 0.58 -1.1 438,657 + RR42_RS01955 0.71 -1.6 438,657 + RR42_RS01955 0.71 +0.3 438,657 + RR42_RS01955 0.71 +0.9 438,657 + RR42_RS01955 0.71 +0.5 438,657 + RR42_RS01955 0.71 +0.4 438,658 - RR42_RS01955 0.71 -1.7 438,658 - RR42_RS01955 0.71 +0.8 438,658 - RR42_RS01955 0.71 +0.6 438,658 - RR42_RS01955 0.71 +1.9 438,658 - RR42_RS01955 0.71 +1.5 438,658 - RR42_RS01955 0.71 +1.7 438,670 - RR42_RS01955 0.72 -0.3 438,762 + RR42_RS01955 0.78 -0.7 438,762 + RR42_RS01955 0.78 -0.5 438,763 - RR42_RS01955 0.79 -0.2 438,763 - RR42_RS01955 0.79 +0.9 438,763 - RR42_RS01955 0.79 -0.5 438,763 - RR42_RS01955 0.79 -0.3 438,763 - RR42_RS01955 0.79 +0.3 438,887 + RR42_RS01955 0.88 +0.2 439,167 + +0.2 439,168 - +0.5 439,168 - -1.7 439,409 + +1.7 439,409 + -0.3 439,410 - -0.0 439,490 + RR42_RS01960 0.13 +1.9 439,490 + RR42_RS01960 0.13 -0.1 439,490 + RR42_RS01960 0.13 +0.6 439,490 + RR42_RS01960 0.13 -0.1 439,490 + RR42_RS01960 0.13 -1.1 439,491 - RR42_RS01960 0.13 -0.9 439,491 - RR42_RS01960 0.13 -0.2 439,625 + RR42_RS01960 0.33 +2.0 439,679 + RR42_RS01960 0.41 +1.5 439,679 + RR42_RS01960 0.41 +1.2 439,680 - RR42_RS01960 0.42 -3.0 439,680 - RR42_RS01960 0.42 +0.5 440,119 + +1.9 440,120 - +0.4 440,120 - -1.5 440,120 - -1.2 440,177 + +0.5 440,177 + +0.5 440,177 + -1.5 440,177 + -1.8 440,178 - -0.8 440,178 - -0.4 440,178 - +0.9 440,178 - -0.0 440,178 - +0.2 440,178 - +0.1 440,182 + +0.2 440,183 - +1.1 440,183 - -1.6 440,183 - +0.9 440,183 - -1.6 440,183 - +0.2 440,236 + -0.1 440,236 + -0.3 440,237 - -1.1 440,237 - +1.2 440,242 - +1.5 440,242 - -0.2 440,253 + +2.1 440,253 + +0.3 440,253 + -1.1 440,253 + +0.9 440,253 + -0.5 440,253 + +0.5 440,253 + -0.3 440,253 + +0.7 440,253 + -2.1 440,254 - +0.1 440,254 - +0.3 440,254 - +0.6 440,283 + +0.3 440,283 + -2.8 440,283 + -0.5 440,284 - +0.0 440,284 - +0.8 440,354 + RR42_RS01965 0.12 +0.4 440,372 + RR42_RS01965 0.15 -2.2 440,456 + RR42_RS01965 0.26 +0.6 440,456 + RR42_RS01965 0.26 -0.9 440,456 + RR42_RS01965 0.26 -2.2 440,456 + RR42_RS01965 0.26 -0.3 440,456 + RR42_RS01965 0.26 +0.6 440,456 + RR42_RS01965 0.26 -3.2 440,456 + RR42_RS01965 0.26 +0.9 440,456 + RR42_RS01965 0.26 -0.6 440,516 + RR42_RS01965 0.35 -1.3 440,517 - RR42_RS01965 0.35 +0.5 440,831 + RR42_RS01965 0.80 +0.9 440,831 + RR42_RS01965 0.80 +0.5 440,831 + RR42_RS01965 0.80 +0.4 440,832 - RR42_RS01965 0.80 -0.5 440,873 + RR42_RS01965 0.86 -0.0 440,873 + RR42_RS01965 0.86 +2.7 440,873 + RR42_RS01965 0.86 -1.0 440,873 + RR42_RS01965 0.86 +0.5 440,873 + RR42_RS01965 0.86 -0.1 440,874 - RR42_RS01965 0.86 +1.2 440,874 - RR42_RS01965 0.86 -0.1 440,874 - RR42_RS01965 0.86 +0.8 440,964 + -0.6 440,964 + -0.5 440,964 + -0.1 440,965 - +1.1 440,965 - +0.8 440,988 + -0.5 440,989 - -0.8 440,995 - +1.0 440,995 - +0.6 441,054 + RR42_RS01970 0.12 +2.6 441,055 - RR42_RS01970 0.12 +0.9 441,055 - RR42_RS01970 0.12 +2.0 441,055 - RR42_RS01970 0.12 +4.2 441,060 + RR42_RS01970 0.13 +0.2 441,060 + RR42_RS01970 0.13 +0.8 441,061 - RR42_RS01970 0.13 +1.5 441,061 - RR42_RS01970 0.13 +0.2 441,061 - RR42_RS01970 0.13 +1.3
Or see this region's nucleotide sequence