Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00245

Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00235 and RR42_RS00240 are separated by 93 nucleotidesRR42_RS00240 and RR42_RS00245 are separated by 253 nucleotidesRR42_RS00245 and RR42_RS00250 are separated by 17 nucleotides RR42_RS00235: RR42_RS00235 - membrane protein, at 72,667 to 73,938 _RS00235 RR42_RS00240: RR42_RS00240 - nucleotide pyrophosphohydrolase, at 74,032 to 74,367 _RS00240 RR42_RS00245: RR42_RS00245 - microcystin degradation protein MlrC, at 74,621 to 76,102 _RS00245 RR42_RS00250: RR42_RS00250 - GntR family transcriptional regulator, at 76,120 to 77,166 _RS00250 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1at 73.771 kb on - strand, within RR42_RS00235at 73.850 kb on - strandat 73.944 kb on - strandat 74.010 kb on + strandat 74.104 kb on + strand, within RR42_RS00240at 74.105 kb on - strand, within RR42_RS00240at 74.105 kb on - strand, within RR42_RS00240at 74.105 kb on - strand, within RR42_RS00240at 74.105 kb on - strand, within RR42_RS00240at 74.257 kb on + strand, within RR42_RS00240at 74.258 kb on - strand, within RR42_RS00240at 74.659 kb on + strandat 74.660 kb on - strandat 74.660 kb on - strandat 74.850 kb on - strand, within RR42_RS00245at 75.081 kb on - strand, within RR42_RS00245at 75.099 kb on - strand, within RR42_RS00245at 75.314 kb on - strand, within RR42_RS00245at 75.428 kb on + strand, within RR42_RS00245at 75.768 kb on - strand, within RR42_RS00245at 75.768 kb on - strand, within RR42_RS00245at 75.789 kb on - strand, within RR42_RS00245at 75.896 kb on - strand, within RR42_RS00245at 75.953 kb on + strand, within RR42_RS00245at 75.953 kb on + strand, within RR42_RS00245at 76.100 kb on + strandat 76.101 kb on - strandat 76.130 kb on + strandat 76.130 kb on + strandat 76.131 kb on - strandat 76.131 kb on - strandat 76.199 kb on - strandat 76.461 kb on - strand, within RR42_RS00250at 76.666 kb on + strand, within RR42_RS00250at 76.666 kb on + strand, within RR42_RS00250at 76.667 kb on - strand, within RR42_RS00250at 76.779 kb on - strand, within RR42_RS00250at 76.779 kb on - strand, within RR42_RS00250at 77.006 kb on - strand, within RR42_RS00250at 77.069 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM
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73,771 - RR42_RS00235 0.87 +0.7
73,850 - -1.2
73,944 - -1.1
74,010 + +0.4
74,104 + RR42_RS00240 0.21 +0.3
74,105 - RR42_RS00240 0.22 -1.7
74,105 - RR42_RS00240 0.22 -1.5
74,105 - RR42_RS00240 0.22 +0.2
74,105 - RR42_RS00240 0.22 -1.3
74,257 + RR42_RS00240 0.67 -0.3
74,258 - RR42_RS00240 0.67 -0.3
74,659 + +0.2
74,660 - -0.5
74,660 - -0.1
74,850 - RR42_RS00245 0.15 -0.3
75,081 - RR42_RS00245 0.31 +0.4
75,099 - RR42_RS00245 0.32 +0.5
75,314 - RR42_RS00245 0.47 +1.1
75,428 + RR42_RS00245 0.54 +1.5
75,768 - RR42_RS00245 0.77 -0.8
75,768 - RR42_RS00245 0.77 +0.7
75,789 - RR42_RS00245 0.79 +0.9
75,896 - RR42_RS00245 0.86 +1.0
75,953 + RR42_RS00245 0.90 +1.4
75,953 + RR42_RS00245 0.90 -0.9
76,100 + +0.1
76,101 - -0.0
76,130 + -1.2
76,130 + -0.3
76,131 - -0.3
76,131 - -0.1
76,199 - -1.0
76,461 - RR42_RS00250 0.33 -0.4
76,666 + RR42_RS00250 0.52 -1.4
76,666 + RR42_RS00250 0.52 -1.5
76,667 - RR42_RS00250 0.52 -1.1
76,779 - RR42_RS00250 0.63 -0.8
76,779 - RR42_RS00250 0.63 -0.3
77,006 - RR42_RS00250 0.85 -3.5
77,069 + -3.4

Or see this region's nucleotide sequence