Experiment: Carbon source 2-Deoxy-D-Ribose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00220 and RR42_RS00225 are separated by 86 nucleotides RR42_RS00225 and RR42_RS00230 are separated by 197 nucleotides RR42_RS00230 and RR42_RS00235 are separated by 135 nucleotides
RR42_RS00220: RR42_RS00220 - peptidase M20, at 69,276 to 70,568
_RS00220
RR42_RS00225: RR42_RS00225 - XRE family transcriptional regulator, at 70,655 to 71,239
_RS00225
RR42_RS00230: RR42_RS00230 - ADP-ribosylglycohydrolase, at 71,437 to 72,531
_RS00230
RR42_RS00235: RR42_RS00235 - membrane protein, at 72,667 to 73,938
_RS00235
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1 at 70.513 kb on + strand at 70.539 kb on + strand at 70.540 kb on - strand at 70.566 kb on + strand at 70.916 kb on - strand, within RR42_RS00225 at 71.123 kb on + strand, within RR42_RS00225 at 71.123 kb on + strand, within RR42_RS00225 at 71.124 kb on - strand, within RR42_RS00225 at 71.124 kb on - strand, within RR42_RS00225 at 71.124 kb on - strand, within RR42_RS00225 at 71.124 kb on - strand, within RR42_RS00225 at 71.391 kb on + strand at 71.563 kb on + strand, within RR42_RS00230 at 71.563 kb on + strand, within RR42_RS00230 at 71.563 kb on + strand, within RR42_RS00230 at 71.564 kb on - strand, within RR42_RS00230 at 71.564 kb on - strand, within RR42_RS00230 at 71.564 kb on - strand, within RR42_RS00230 at 71.704 kb on + strand, within RR42_RS00230 at 71.705 kb on - strand, within RR42_RS00230 at 71.782 kb on + strand, within RR42_RS00230 at 72.517 kb on + strand at 72.561 kb on + strand at 72.573 kb on + strand at 73.108 kb on - strand, within RR42_RS00235 at 73.500 kb on - strand, within RR42_RS00235
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 20 mM remove 70,513 + -0.3 70,539 + +0.5 70,540 - -1.0 70,566 + -0.1 70,916 - RR42_RS00225 0.45 +0.6 71,123 + RR42_RS00225 0.80 +1.0 71,123 + RR42_RS00225 0.80 +0.6 71,124 - RR42_RS00225 0.80 +1.6 71,124 - RR42_RS00225 0.80 +0.1 71,124 - RR42_RS00225 0.80 +0.4 71,124 - RR42_RS00225 0.80 -0.3 71,391 + +0.2 71,563 + RR42_RS00230 0.12 +0.2 71,563 + RR42_RS00230 0.12 -1.9 71,563 + RR42_RS00230 0.12 -2.4 71,564 - RR42_RS00230 0.12 -1.2 71,564 - RR42_RS00230 0.12 +0.2 71,564 - RR42_RS00230 0.12 -0.5 71,704 + RR42_RS00230 0.24 -0.1 71,705 - RR42_RS00230 0.24 -1.4 71,782 + RR42_RS00230 0.32 -1.5 72,517 + -1.3 72,561 + +0.1 72,573 + +0.7 73,108 - RR42_RS00235 0.35 +0.1 73,500 - RR42_RS00235 0.65 -0.5
Or see this region's nucleotide sequence