Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS23910

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS10460 and RALBFv3_RS23910 are separated by 337 nucleotidesRALBFv3_RS23910 and RALBFv3_RS10465 overlap by 5 nucleotides RALBFv3_RS10460: RALBFv3_RS10460 - acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha, at 2,325,428 to 2,327,452 _RS10460 RALBFv3_RS23910: RALBFv3_RS23910 - hypothetical protein, at 2,327,790 to 2,328,028 _RS23910 RALBFv3_RS10465: RALBFv3_RS10465 - biotin synthase BioB, at 2,328,024 to 2,329,103 _RS10465 Position (kb) 2327 2328 2329Strain fitness (log2 ratio) -1 0 1 2at 2326.848 kb on + strand, within RALBFv3_RS10460at 2326.848 kb on + strand, within RALBFv3_RS10460at 2327.052 kb on + strand, within RALBFv3_RS10460at 2327.274 kb on + strandat 2327.275 kb on - strandat 2327.275 kb on - strandat 2327.358 kb on + strandat 2327.480 kb on - strandat 2327.792 kb on - strandat 2328.038 kb on + strandat 2328.048 kb on - strandat 2328.535 kb on + strand, within RALBFv3_RS10465at 2328.535 kb on + strand, within RALBFv3_RS10465at 2328.536 kb on - strand, within RALBFv3_RS10465at 2328.562 kb on + strand, within RALBFv3_RS10465at 2328.562 kb on + strand, within RALBFv3_RS10465at 2328.595 kb on + strand, within RALBFv3_RS10465at 2328.596 kb on - strand, within RALBFv3_RS10465at 2328.596 kb on - strand, within RALBFv3_RS10465at 2328.599 kb on - strand, within RALBFv3_RS10465at 2328.868 kb on + strand, within RALBFv3_RS10465at 2328.869 kb on - strand, within RALBFv3_RS10465

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
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2,326,848 + RALBFv3_RS10460 0.70 -1.3
2,326,848 + RALBFv3_RS10460 0.70 -1.6
2,327,052 + RALBFv3_RS10460 0.80 -1.0
2,327,274 + +0.8
2,327,275 - +1.4
2,327,275 - +1.7
2,327,358 + -1.3
2,327,480 - -0.0
2,327,792 - -0.3
2,328,038 + -0.5
2,328,048 - -0.2
2,328,535 + RALBFv3_RS10465 0.47 +1.4
2,328,535 + RALBFv3_RS10465 0.47 +0.4
2,328,536 - RALBFv3_RS10465 0.47 -0.3
2,328,562 + RALBFv3_RS10465 0.50 -0.5
2,328,562 + RALBFv3_RS10465 0.50 -0.9
2,328,595 + RALBFv3_RS10465 0.53 +1.7
2,328,596 - RALBFv3_RS10465 0.53 -0.5
2,328,596 - RALBFv3_RS10465 0.53 -0.6
2,328,599 - RALBFv3_RS10465 0.53 -1.3
2,328,868 + RALBFv3_RS10465 0.78 +1.8
2,328,869 - RALBFv3_RS10465 0.78 -0.0

Or see this region's nucleotide sequence