Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS22405

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS22400 and RALBFv3_RS22405 are separated by 15 nucleotidesRALBFv3_RS22405 and RALBFv3_RS22410 are separated by 103 nucleotides RALBFv3_RS22400: RALBFv3_RS22400 - feruloyl-CoA synthase, at 1,780,434 to 1,782,317 _RS22400 RALBFv3_RS22405: RALBFv3_RS22405 - salicylaldehyde dehydrogenase, at 1,782,333 to 1,783,787 _RS22405 RALBFv3_RS22410: RALBFv3_RS22410 - crotonase, at 1,783,891 to 1,784,724 _RS22410 Position (kb) 1782 1783 1784Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1781.377 kb on + strand, within RALBFv3_RS22400at 1781.378 kb on - strand, within RALBFv3_RS22400at 1781.455 kb on + strand, within RALBFv3_RS22400at 1781.455 kb on + strand, within RALBFv3_RS22400at 1781.455 kb on + strand, within RALBFv3_RS22400at 1781.456 kb on - strand, within RALBFv3_RS22400at 1781.458 kb on + strand, within RALBFv3_RS22400at 1781.459 kb on - strand, within RALBFv3_RS22400at 1781.459 kb on - strand, within RALBFv3_RS22400at 1781.473 kb on + strand, within RALBFv3_RS22400at 1781.473 kb on + strand, within RALBFv3_RS22400at 1781.474 kb on - strand, within RALBFv3_RS22400at 1781.474 kb on - strand, within RALBFv3_RS22400at 1781.474 kb on - strand, within RALBFv3_RS22400at 1781.474 kb on - strand, within RALBFv3_RS22400at 1781.845 kb on + strand, within RALBFv3_RS22400at 1781.846 kb on - strand, within RALBFv3_RS22400at 1781.893 kb on + strand, within RALBFv3_RS22400at 1781.894 kb on - strand, within RALBFv3_RS22400at 1781.894 kb on - strand, within RALBFv3_RS22400at 1781.915 kb on - strand, within RALBFv3_RS22400at 1781.935 kb on + strand, within RALBFv3_RS22400at 1781.950 kb on + strand, within RALBFv3_RS22400at 1781.950 kb on + strand, within RALBFv3_RS22400at 1781.950 kb on + strand, within RALBFv3_RS22400at 1781.950 kb on + strand, within RALBFv3_RS22400at 1781.950 kb on + strand, within RALBFv3_RS22400at 1781.951 kb on - strand, within RALBFv3_RS22400at 1781.951 kb on - strand, within RALBFv3_RS22400at 1781.951 kb on - strand, within RALBFv3_RS22400at 1781.951 kb on - strand, within RALBFv3_RS22400at 1781.951 kb on - strand, within RALBFv3_RS22400at 1781.951 kb on - strand, within RALBFv3_RS22400at 1781.951 kb on - strand, within RALBFv3_RS22400at 1781.951 kb on - strand, within RALBFv3_RS22400at 1782.082 kb on + strand, within RALBFv3_RS22400at 1782.082 kb on + strand, within RALBFv3_RS22400at 1782.082 kb on + strand, within RALBFv3_RS22400at 1782.082 kb on + strand, within RALBFv3_RS22400at 1782.082 kb on + strand, within RALBFv3_RS22400at 1782.082 kb on + strand, within RALBFv3_RS22400at 1782.082 kb on + strand, within RALBFv3_RS22400at 1782.083 kb on - strand, within RALBFv3_RS22400at 1782.083 kb on - strand, within RALBFv3_RS22400at 1782.083 kb on - strand, within RALBFv3_RS22400at 1782.488 kb on + strand, within RALBFv3_RS22405at 1782.489 kb on - strand, within RALBFv3_RS22405at 1782.570 kb on + strand, within RALBFv3_RS22405at 1782.571 kb on + strand, within RALBFv3_RS22405at 1782.572 kb on - strand, within RALBFv3_RS22405at 1783.726 kb on + strandat 1783.726 kb on + strandat 1783.726 kb on + strandat 1783.726 kb on + strandat 1783.902 kb on + strandat 1783.902 kb on + strandat 1783.903 kb on - strandat 1783.904 kb on + strandat 1783.904 kb on + strandat 1783.904 kb on + strandat 1783.905 kb on - strandat 1783.905 kb on - strandat 1783.905 kb on - strandat 1784.009 kb on + strand, within RALBFv3_RS22410at 1784.015 kb on + strand, within RALBFv3_RS22410at 1784.015 kb on + strand, within RALBFv3_RS22410at 1784.015 kb on + strand, within RALBFv3_RS22410at 1784.016 kb on - strand, within RALBFv3_RS22410at 1784.016 kb on - strand, within RALBFv3_RS22410at 1784.016 kb on - strand, within RALBFv3_RS22410at 1784.016 kb on - strand, within RALBFv3_RS22410at 1784.216 kb on + strand, within RALBFv3_RS22410at 1784.216 kb on + strand, within RALBFv3_RS22410at 1784.216 kb on + strand, within RALBFv3_RS22410at 1784.216 kb on + strand, within RALBFv3_RS22410at 1784.216 kb on + strand, within RALBFv3_RS22410at 1784.217 kb on - strand, within RALBFv3_RS22410at 1784.217 kb on - strand, within RALBFv3_RS22410at 1784.217 kb on - strand, within RALBFv3_RS22410at 1784.217 kb on - strand, within RALBFv3_RS22410at 1784.217 kb on - strand, within RALBFv3_RS22410at 1784.217 kb on - strand, within RALBFv3_RS22410at 1784.217 kb on - strand, within RALBFv3_RS22410at 1784.220 kb on - strand, within RALBFv3_RS22410at 1784.412 kb on - strand, within RALBFv3_RS22410at 1784.502 kb on - strand, within RALBFv3_RS22410at 1784.502 kb on - strand, within RALBFv3_RS22410at 1784.502 kb on - strand, within RALBFv3_RS22410at 1784.502 kb on - strand, within RALBFv3_RS22410at 1784.714 kb on + strandat 1784.714 kb on + strandat 1784.715 kb on - strandat 1784.715 kb on - strandat 1784.715 kb on - strandat 1784.715 kb on - strandat 1784.715 kb on - strandat 1784.779 kb on + strandat 1784.779 kb on + strandat 1784.779 kb on + strandat 1784.780 kb on - strandat 1784.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
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1,781,377 + RALBFv3_RS22400 0.50 +0.6
1,781,378 - RALBFv3_RS22400 0.50 +1.9
1,781,455 + RALBFv3_RS22400 0.54 -0.7
1,781,455 + RALBFv3_RS22400 0.54 -0.7
1,781,455 + RALBFv3_RS22400 0.54 +0.8
1,781,456 - RALBFv3_RS22400 0.54 -1.3
1,781,458 + RALBFv3_RS22400 0.54 +1.3
1,781,459 - RALBFv3_RS22400 0.54 -1.6
1,781,459 - RALBFv3_RS22400 0.54 +1.0
1,781,473 + RALBFv3_RS22400 0.55 +0.6
1,781,473 + RALBFv3_RS22400 0.55 -0.3
1,781,474 - RALBFv3_RS22400 0.55 -0.1
1,781,474 - RALBFv3_RS22400 0.55 +2.9
1,781,474 - RALBFv3_RS22400 0.55 -0.8
1,781,474 - RALBFv3_RS22400 0.55 +2.4
1,781,845 + RALBFv3_RS22400 0.75 -2.8
1,781,846 - RALBFv3_RS22400 0.75 -1.6
1,781,893 + RALBFv3_RS22400 0.77 +1.0
1,781,894 - RALBFv3_RS22400 0.77 -0.2
1,781,894 - RALBFv3_RS22400 0.77 -0.6
1,781,915 - RALBFv3_RS22400 0.79 +2.1
1,781,935 + RALBFv3_RS22400 0.80 +1.4
1,781,950 + RALBFv3_RS22400 0.80 -0.3
1,781,950 + RALBFv3_RS22400 0.80 -0.4
1,781,950 + RALBFv3_RS22400 0.80 -0.5
1,781,950 + RALBFv3_RS22400 0.80 -1.5
1,781,950 + RALBFv3_RS22400 0.80 -0.8
1,781,951 - RALBFv3_RS22400 0.81 +0.9
1,781,951 - RALBFv3_RS22400 0.81 +0.5
1,781,951 - RALBFv3_RS22400 0.81 +1.5
1,781,951 - RALBFv3_RS22400 0.81 +0.5
1,781,951 - RALBFv3_RS22400 0.81 +0.5
1,781,951 - RALBFv3_RS22400 0.81 -1.3
1,781,951 - RALBFv3_RS22400 0.81 -0.9
1,781,951 - RALBFv3_RS22400 0.81 +0.5
1,782,082 + RALBFv3_RS22400 0.87 +1.0
1,782,082 + RALBFv3_RS22400 0.87 +0.1
1,782,082 + RALBFv3_RS22400 0.87 +1.0
1,782,082 + RALBFv3_RS22400 0.87 +1.4
1,782,082 + RALBFv3_RS22400 0.87 -0.8
1,782,082 + RALBFv3_RS22400 0.87 +0.4
1,782,082 + RALBFv3_RS22400 0.87 +1.2
1,782,083 - RALBFv3_RS22400 0.88 -1.0
1,782,083 - RALBFv3_RS22400 0.88 -0.7
1,782,083 - RALBFv3_RS22400 0.88 +1.1
1,782,488 + RALBFv3_RS22405 0.11 -0.9
1,782,489 - RALBFv3_RS22405 0.11 -2.3
1,782,570 + RALBFv3_RS22405 0.16 +0.1
1,782,571 + RALBFv3_RS22405 0.16 +1.1
1,782,572 - RALBFv3_RS22405 0.16 +0.3
1,783,726 + -2.0
1,783,726 + +0.4
1,783,726 + -0.2
1,783,726 + +1.7
1,783,902 + +1.6
1,783,902 + +2.5
1,783,903 - +3.7
1,783,904 + +1.3
1,783,904 + +1.3
1,783,904 + -0.2
1,783,905 - +1.1
1,783,905 - +0.6
1,783,905 - -0.3
1,784,009 + RALBFv3_RS22410 0.14 -0.0
1,784,015 + RALBFv3_RS22410 0.15 -0.2
1,784,015 + RALBFv3_RS22410 0.15 +0.8
1,784,015 + RALBFv3_RS22410 0.15 -0.4
1,784,016 - RALBFv3_RS22410 0.15 +1.6
1,784,016 - RALBFv3_RS22410 0.15 +0.8
1,784,016 - RALBFv3_RS22410 0.15 -2.5
1,784,016 - RALBFv3_RS22410 0.15 -1.5
1,784,216 + RALBFv3_RS22410 0.39 -0.4
1,784,216 + RALBFv3_RS22410 0.39 -0.8
1,784,216 + RALBFv3_RS22410 0.39 +0.1
1,784,216 + RALBFv3_RS22410 0.39 +0.2
1,784,216 + RALBFv3_RS22410 0.39 -1.5
1,784,217 - RALBFv3_RS22410 0.39 +0.0
1,784,217 - RALBFv3_RS22410 0.39 +0.3
1,784,217 - RALBFv3_RS22410 0.39 -0.4
1,784,217 - RALBFv3_RS22410 0.39 -1.1
1,784,217 - RALBFv3_RS22410 0.39 +0.5
1,784,217 - RALBFv3_RS22410 0.39 -0.2
1,784,217 - RALBFv3_RS22410 0.39 +0.5
1,784,220 - RALBFv3_RS22410 0.39 -0.8
1,784,412 - RALBFv3_RS22410 0.62 +0.4
1,784,502 - RALBFv3_RS22410 0.73 +0.7
1,784,502 - RALBFv3_RS22410 0.73 -0.8
1,784,502 - RALBFv3_RS22410 0.73 -0.4
1,784,502 - RALBFv3_RS22410 0.73 -1.3
1,784,714 + -0.3
1,784,714 + +0.8
1,784,715 - -0.4
1,784,715 - +1.5
1,784,715 - +0.7
1,784,715 - -0.2
1,784,715 - -0.6
1,784,779 + +0.6
1,784,779 + -0.4
1,784,779 + +0.7
1,784,780 - +1.0
1,784,780 - +0.3

Or see this region's nucleotide sequence