Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS20235 and RALBFv3_RS20240 are separated by 232 nucleotides RALBFv3_RS20240 and RALBFv3_RS20245 are separated by 55 nucleotides
RALBFv3_RS20235: RALBFv3_RS20235 - LysR family transcriptional regulator, at 1,232,834 to 1,233,757
_RS20235
RALBFv3_RS20240: RALBFv3_RS20240 - homogentisate 1,2-dioxygenase, at 1,233,990 to 1,235,336
_RS20240
RALBFv3_RS20245: RALBFv3_RS20245 - fumarylacetoacetase, at 1,235,392 to 1,236,672
_RS20245
Position (kb) 1233
1234
1235
1236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1233.038 kb on - strand, within RALBFv3_RS20235 at 1233.038 kb on - strand, within RALBFv3_RS20235 at 1233.039 kb on + strand, within RALBFv3_RS20235 at 1233.039 kb on + strand, within RALBFv3_RS20235 at 1233.039 kb on + strand, within RALBFv3_RS20235 at 1233.040 kb on - strand, within RALBFv3_RS20235 at 1233.040 kb on - strand, within RALBFv3_RS20235 at 1233.124 kb on - strand, within RALBFv3_RS20235 at 1233.241 kb on - strand, within RALBFv3_RS20235 at 1233.241 kb on - strand, within RALBFv3_RS20235 at 1233.241 kb on - strand, within RALBFv3_RS20235 at 1233.426 kb on + strand, within RALBFv3_RS20235 at 1233.426 kb on + strand, within RALBFv3_RS20235 at 1233.843 kb on + strand at 1233.844 kb on - strand at 1233.857 kb on - strand at 1234.149 kb on + strand, within RALBFv3_RS20240 at 1234.429 kb on - strand, within RALBFv3_RS20240 at 1234.464 kb on + strand, within RALBFv3_RS20240 at 1234.725 kb on + strand, within RALBFv3_RS20240 at 1234.842 kb on + strand, within RALBFv3_RS20240 at 1234.843 kb on - strand, within RALBFv3_RS20240 at 1234.843 kb on - strand, within RALBFv3_RS20240 at 1234.848 kb on + strand, within RALBFv3_RS20240 at 1234.888 kb on - strand, within RALBFv3_RS20240 at 1234.888 kb on - strand, within RALBFv3_RS20240 at 1235.067 kb on + strand, within RALBFv3_RS20240 at 1235.067 kb on + strand, within RALBFv3_RS20240 at 1235.120 kb on + strand, within RALBFv3_RS20240 at 1235.120 kb on + strand, within RALBFv3_RS20240 at 1235.121 kb on - strand, within RALBFv3_RS20240 at 1235.364 kb on - strand at 1235.364 kb on - strand at 1235.364 kb on - strand at 1235.610 kb on + strand, within RALBFv3_RS20245 at 1235.610 kb on + strand, within RALBFv3_RS20245 at 1235.881 kb on + strand, within RALBFv3_RS20245 at 1236.137 kb on - strand, within RALBFv3_RS20245 at 1236.137 kb on - strand, within RALBFv3_RS20245 at 1236.137 kb on - strand, within RALBFv3_RS20245
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days remove 1,233,038 - RALBFv3_RS20235 0.22 -0.4 1,233,038 - RALBFv3_RS20235 0.22 +0.9 1,233,039 + RALBFv3_RS20235 0.22 -0.1 1,233,039 + RALBFv3_RS20235 0.22 +0.7 1,233,039 + RALBFv3_RS20235 0.22 +1.5 1,233,040 - RALBFv3_RS20235 0.22 -0.2 1,233,040 - RALBFv3_RS20235 0.22 -0.1 1,233,124 - RALBFv3_RS20235 0.31 -1.1 1,233,241 - RALBFv3_RS20235 0.44 -0.1 1,233,241 - RALBFv3_RS20235 0.44 -0.5 1,233,241 - RALBFv3_RS20235 0.44 -1.1 1,233,426 + RALBFv3_RS20235 0.64 -0.4 1,233,426 + RALBFv3_RS20235 0.64 -1.1 1,233,843 + -0.7 1,233,844 - -0.8 1,233,857 - +0.3 1,234,149 + RALBFv3_RS20240 0.12 +0.8 1,234,429 - RALBFv3_RS20240 0.33 +0.7 1,234,464 + RALBFv3_RS20240 0.35 -0.1 1,234,725 + RALBFv3_RS20240 0.55 -0.8 1,234,842 + RALBFv3_RS20240 0.63 -0.5 1,234,843 - RALBFv3_RS20240 0.63 +1.0 1,234,843 - RALBFv3_RS20240 0.63 -0.1 1,234,848 + RALBFv3_RS20240 0.64 -1.0 1,234,888 - RALBFv3_RS20240 0.67 -2.3 1,234,888 - RALBFv3_RS20240 0.67 -0.1 1,235,067 + RALBFv3_RS20240 0.80 -0.9 1,235,067 + RALBFv3_RS20240 0.80 +2.9 1,235,120 + RALBFv3_RS20240 0.84 +3.6 1,235,120 + RALBFv3_RS20240 0.84 -2.1 1,235,121 - RALBFv3_RS20240 0.84 -0.8 1,235,364 - +0.6 1,235,364 - +2.0 1,235,364 - -1.1 1,235,610 + RALBFv3_RS20245 0.17 -0.5 1,235,610 + RALBFv3_RS20245 0.17 -0.4 1,235,881 + RALBFv3_RS20245 0.38 -2.9 1,236,137 - RALBFv3_RS20245 0.58 +0.9 1,236,137 - RALBFv3_RS20245 0.58 -0.5 1,236,137 - RALBFv3_RS20245 0.58 -1.5
Or see this region's nucleotide sequence