Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS13950

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS13945 and RALBFv3_RS13950 are separated by 64 nucleotidesRALBFv3_RS13950 and RALBFv3_RS13955 are separated by 3 nucleotidesRALBFv3_RS13955 and RALBFv3_RS13960 overlap by 4 nucleotides RALBFv3_RS13945: RALBFv3_RS13945 - peptidase M48, at 3,049,876 to 3,051,132 _RS13945 RALBFv3_RS13950: RALBFv3_RS13950 - oligoribonuclease, at 3,051,197 to 3,051,856 _RS13950 RALBFv3_RS13955: RALBFv3_RS13955 - molybdopterin adenylyltransferase, at 3,051,860 to 3,052,498 _RS13955 RALBFv3_RS13960: RALBFv3_RS13960 - DUF615 domain-containing protein, at 3,052,495 to 3,053,121 _RS13960 Position (kb) 3051 3052Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3050.491 kb on - strand, within RALBFv3_RS13945at 3050.765 kb on + strand, within RALBFv3_RS13945at 3050.966 kb on + strand, within RALBFv3_RS13945at 3050.967 kb on - strand, within RALBFv3_RS13945at 3051.936 kb on + strand, within RALBFv3_RS13955at 3051.936 kb on + strand, within RALBFv3_RS13955at 3052.407 kb on + strand, within RALBFv3_RS13955at 3052.408 kb on - strand, within RALBFv3_RS13955at 3052.789 kb on + strand, within RALBFv3_RS13960at 3052.852 kb on - strand, within RALBFv3_RS13960

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
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3,050,491 - RALBFv3_RS13945 0.49 -2.2
3,050,765 + RALBFv3_RS13945 0.71 +2.8
3,050,966 + RALBFv3_RS13945 0.87 +0.5
3,050,967 - RALBFv3_RS13945 0.87 -0.6
3,051,936 + RALBFv3_RS13955 0.12 +0.6
3,051,936 + RALBFv3_RS13955 0.12 -2.0
3,052,407 + RALBFv3_RS13955 0.86 +1.5
3,052,408 - RALBFv3_RS13955 0.86 -2.2
3,052,789 + RALBFv3_RS13960 0.47 -1.2
3,052,852 - RALBFv3_RS13960 0.57 -0.1

Or see this region's nucleotide sequence