Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS12000

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
2,646,698	+		RALBFv3_RS11990	0.73	-0.4
2,646,698	+		RALBFv3_RS11990	0.73	+2.2
2,646,698	+		RALBFv3_RS11990	0.73	+0.6
2,646,698	+		RALBFv3_RS11990	0.73	+2.7
2,646,698	+		RALBFv3_RS11990	0.73	+1.3
2,646,698	+		RALBFv3_RS11990	0.73	-0.3
2,646,698	+		RALBFv3_RS11990	0.73	+0.5
2,646,699	-		RALBFv3_RS11990	0.73	-1.3
2,646,699	-		RALBFv3_RS11990	0.73	-0.3
2,646,699	-		RALBFv3_RS11990	0.73	+1.3
2,646,699	-		RALBFv3_RS11990	0.73	-0.8
2,646,699	-		RALBFv3_RS11990	0.73	-1.5
2,646,699	-		RALBFv3_RS11990	0.73	-0.5
2,646,699	-		RALBFv3_RS11990	0.73	+0.2
2,646,717	-		RALBFv3_RS11990	0.74	+0.3
2,646,794	+		RALBFv3_RS11990	0.79	+0.5
2,646,860	+		RALBFv3_RS11990	0.83	+1.2
2,646,861	-		RALBFv3_RS11990	0.83	-0.1
2,646,861	-		RALBFv3_RS11990	0.83	-2.6
2,646,861	-		RALBFv3_RS11990	0.83	-0.7
2,646,861	-		RALBFv3_RS11990	0.83	-0.4
2,646,861	-		RALBFv3_RS11990	0.83	-2.7
2,646,861	-		RALBFv3_RS11990	0.83	-2.8
2,647,018	+				-0.4
2,647,019	+				-0.4
2,647,020	-				+0.5
2,647,025	+				-1.9
2,647,025	+				+3.9
2,647,025	+				+0.5
2,647,025	+				+0.2
2,647,025	+				-0.1
2,647,026	-				-0.7
2,647,026	-				+0.2
2,647,026	-				+1.0
2,647,026	-				-1.4
2,647,035	-				-2.2
2,647,248	+				+1.2
2,647,248	+				+0.7
2,647,299	+				+2.1
2,647,300	-				+0.9
2,647,448	+		RALBFv3_RS11995	0.31	-0.6
2,647,448	+		RALBFv3_RS11995	0.31	-0.2
2,647,448	+		RALBFv3_RS11995	0.31	-1.2
2,647,448	+		RALBFv3_RS11995	0.31	+3.0
2,647,449	-		RALBFv3_RS11995	0.31	-1.3
2,647,449	-		RALBFv3_RS11995	0.31	-0.0
2,647,449	-		RALBFv3_RS11995	0.31	+0.9
2,647,449	-		RALBFv3_RS11995	0.31	+1.1
2,647,449	-		RALBFv3_RS11995	0.31	-0.4
2,647,449	-		RALBFv3_RS11995	0.31	-0.9
2,647,465	+		RALBFv3_RS11995	0.36	+0.1
2,647,465	+		RALBFv3_RS11995	0.36	-0.5
2,647,465	+		RALBFv3_RS11995	0.36	+3.9
2,647,465	+		RALBFv3_RS11995	0.36	+1.1
2,647,465	+		RALBFv3_RS11995	0.36	+1.3
2,647,465	+		RALBFv3_RS11995	0.36	-0.4
2,647,466	-		RALBFv3_RS11995	0.36	+0.5
2,647,469	+		RALBFv3_RS11995	0.37	+3.9
2,647,469	+		RALBFv3_RS11995	0.37	+1.9
2,647,469	+		RALBFv3_RS11995	0.37	+0.1
2,647,469	+		RALBFv3_RS11995	0.37	+2.9
2,647,469	+		RALBFv3_RS11995	0.37	-1.3
2,647,469	+		RALBFv3_RS11995	0.37	-0.3
2,647,469	+		RALBFv3_RS11995	0.37	-0.2
2,647,469	+		RALBFv3_RS11995	0.37	+2.7
2,647,469	+		RALBFv3_RS11995	0.37	+1.4
2,647,469	+		RALBFv3_RS11995	0.37	-0.4
2,647,469	+		RALBFv3_RS11995	0.37	-2.2
2,647,469	+		RALBFv3_RS11995	0.37	+1.3
2,647,470	-		RALBFv3_RS11995	0.37	-2.2
2,647,470	-		RALBFv3_RS11995	0.37	-0.8
2,647,470	-		RALBFv3_RS11995	0.37	-1.7
2,647,470	-		RALBFv3_RS11995	0.37	-0.2
2,647,470	-		RALBFv3_RS11995	0.37	-1.5
2,647,470	-		RALBFv3_RS11995	0.37	+0.1
2,647,470	-		RALBFv3_RS11995	0.37	+0.2
2,647,470	-		RALBFv3_RS11995	0.37	+0.8
2,647,470	-		RALBFv3_RS11995	0.37	-2.5
2,647,470	-		RALBFv3_RS11995	0.37	+0.8
2,647,502	+		RALBFv3_RS11995	0.47	-1.9
2,647,502	+		RALBFv3_RS11995	0.47	-1.0
2,647,502	+		RALBFv3_RS11995	0.47	+0.2
2,647,502	+		RALBFv3_RS11995	0.47	-0.1
2,647,503	-		RALBFv3_RS11995	0.48	+0.0
2,647,579	+		RALBFv3_RS11995	0.72	+0.9
2,647,580	-		RALBFv3_RS11995	0.72	+0.1
2,647,580	-		RALBFv3_RS11995	0.72	-0.2
2,647,748	-				+0.5
2,647,748	-				-0.5
2,647,748	-				+0.0
2,647,852	+		RALBFv3_RS12000	0.12	-0.1
2,647,984	+		RALBFv3_RS12000	0.21	+0.0
2,648,249	+		RALBFv3_RS12000	0.38	+0.2
2,648,361	-		RALBFv3_RS12000	0.45	-1.5
2,648,686	+		RALBFv3_RS12000	0.66	+0.1
2,648,686	+		RALBFv3_RS12000	0.66	+0.5
2,648,686	+		RALBFv3_RS12000	0.66	+0.1
2,648,686	+		RALBFv3_RS12000	0.66	-0.6
2,648,686	+		RALBFv3_RS12000	0.66	-0.1
2,648,686	+		RALBFv3_RS12000	0.66	+0.5
2,648,687	-		RALBFv3_RS12000	0.66	-0.8
2,648,687	-		RALBFv3_RS12000	0.66	+0.1
2,648,687	-		RALBFv3_RS12000	0.66	-0.3
2,648,692	+		RALBFv3_RS12000	0.67	-0.9
2,648,692	+		RALBFv3_RS12000	0.67	-0.6
2,648,692	+		RALBFv3_RS12000	0.67	+0.5
2,648,693	-		RALBFv3_RS12000	0.67	-0.9
2,648,693	-		RALBFv3_RS12000	0.67	-0.3
2,648,693	-		RALBFv3_RS12000	0.67	-0.1
2,648,693	-		RALBFv3_RS12000	0.67	-0.1
2,648,693	-		RALBFv3_RS12000	0.67	+0.4
2,648,693	-		RALBFv3_RS12000	0.67	-0.1
2,648,693	-		RALBFv3_RS12000	0.67	-0.7
2,648,830	+		RALBFv3_RS12000	0.76	-0.5
2,648,831	-		RALBFv3_RS12000	0.76	-0.7
2,648,831	-		RALBFv3_RS12000	0.76	+2.9
2,648,832	+		RALBFv3_RS12000	0.76	-1.4
2,648,833	+		RALBFv3_RS12000	0.76	+0.3
2,648,833	+		RALBFv3_RS12000	0.76	-1.6
2,648,833	+		RALBFv3_RS12000	0.76	-0.7
2,648,833	+		RALBFv3_RS12000	0.76	-0.1
2,648,833	+		RALBFv3_RS12000	0.76	-0.6
2,648,833	+		RALBFv3_RS12000	0.76	+1.1
2,648,834	-		RALBFv3_RS12000	0.76	+0.4
2,648,834	-		RALBFv3_RS12000	0.76	+1.1
2,648,834	-		RALBFv3_RS12000	0.76	-0.8
2,648,834	-		RALBFv3_RS12000	0.76	+4.9
2,648,834	-		RALBFv3_RS12000	0.76	-0.5
2,648,834	-		RALBFv3_RS12000	0.76	-1.5
2,648,834	-		RALBFv3_RS12000	0.76	+0.5
2,648,834	-		RALBFv3_RS12000	0.76	+0.9
2,648,834	-		RALBFv3_RS12000	0.76	-0.3
2,648,834	-		RALBFv3_RS12000	0.76	+3.3
2,648,962	+		RALBFv3_RS12000	0.84	-0.7
2,648,963	-		RALBFv3_RS12000	0.84	+0.7
2,648,995	+		RALBFv3_RS12000	0.86	-3.3
2,648,995	+		RALBFv3_RS12000	0.86	-1.6
2,648,995	+		RALBFv3_RS12000	0.86	+0.0
2,648,996	-		RALBFv3_RS12000	0.86	+1.9
2,648,996	-		RALBFv3_RS12000	0.86	-0.4
2,648,996	-		RALBFv3_RS12000	0.86	-0.5
2,648,996	-		RALBFv3_RS12000	0.86	-1.4
2,649,024	+		RALBFv3_RS12000	0.88	-0.2
2,649,024	+		RALBFv3_RS12000	0.88	-1.3
2,649,024	+		RALBFv3_RS12000	0.88	-0.4
2,649,024	+		RALBFv3_RS12000	0.88	+0.0
2,649,025	-		RALBFv3_RS12000	0.88	-0.7
2,649,025	-		RALBFv3_RS12000	0.88	+0.5
2,649,025	-		RALBFv3_RS12000	0.88	-1.6
2,649,025	-		RALBFv3_RS12000	0.88	+0.4
2,649,242	+				-0.8
2,649,242	+				-0.2
2,649,311	+		RALBFv3_RS12005	0.16	-0.8
2,649,311	+		RALBFv3_RS12005	0.16	-0.4
2,649,311	+		RALBFv3_RS12005	0.16	-0.3
2,649,311	+		RALBFv3_RS12005	0.16	+3.5
2,649,312	-		RALBFv3_RS12005	0.16	-0.7
2,649,312	-		RALBFv3_RS12005	0.16	+1.0
2,649,312	-		RALBFv3_RS12005	0.16	-0.7
2,649,312	-		RALBFv3_RS12005	0.16	-1.6
2,649,312	-		RALBFv3_RS12005	0.16	+0.1
2,649,312	-		RALBFv3_RS12005	0.16	-1.2
2,649,312	-		RALBFv3_RS12005	0.16	+0.6
2,649,464	+		RALBFv3_RS12005	0.38	+1.1
2,649,464	+		RALBFv3_RS12005	0.38	-0.8
2,649,464	+		RALBFv3_RS12005	0.38	+0.3
2,649,464	+		RALBFv3_RS12005	0.38	-0.2
2,649,465	-		RALBFv3_RS12005	0.38	-0.5
2,649,465	-		RALBFv3_RS12005	0.38	+0.7
2,649,465	-		RALBFv3_RS12005	0.38	+1.9
2,649,465	-		RALBFv3_RS12005	0.38	+0.1
2,649,596	+		RALBFv3_RS12005	0.57	-0.9
2,649,596	+		RALBFv3_RS12005	0.57	+0.5
2,649,596	+		RALBFv3_RS12005	0.57	+7.0
2,649,596	+		RALBFv3_RS12005	0.57	-0.8
2,649,596	+		RALBFv3_RS12005	0.57	+0.8
2,649,597	-		RALBFv3_RS12005	0.57	+0.3
2,649,597	-		RALBFv3_RS12005	0.57	+2.4
2,649,597	-		RALBFv3_RS12005	0.57	-1.3
2,649,597	-		RALBFv3_RS12005	0.57	-1.0
2,649,597	-		RALBFv3_RS12005	0.57	-0.9
2,649,597	-		RALBFv3_RS12005	0.57	+0.3
2,649,597	-		RALBFv3_RS12005	0.57	-0.1
2,649,754	+		RALBFv3_RS12005	0.79	-0.7
2,649,755	+		RALBFv3_RS12005	0.80	-0.3
2,649,756	-		RALBFv3_RS12005	0.80	-2.0
2,649,756	-		RALBFv3_RS12005	0.80	-1.6
2,649,951	+				-0.5
2,649,973	+				+1.1
2,650,033	+				-0.2
2,650,033	+				-0.3
2,650,048	+				+0.7
2,650,048	+				-0.1
2,650,053	+				+0.4
2,650,146	+				+0.1
2,650,146	+				+0.2
2,650,147	-				+2.9
2,650,147	-				+0.2
2,650,147	-				+3.9
2,650,148	+				-0.1
2,650,148	+				+4.0
2,650,149	-				-0.7