Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS08045

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
1,776,834	+		RALBFv3_RS08040	0.57	+2.0
1,776,835	-		RALBFv3_RS08040	0.57	+2.1
1,776,835	-		RALBFv3_RS08040	0.57	+5.3
1,776,908	+		RALBFv3_RS08040	0.61	+0.3
1,776,908	+		RALBFv3_RS08040	0.61	+4.0
1,776,908	+		RALBFv3_RS08040	0.61	-0.5
1,776,908	+		RALBFv3_RS08040	0.61	-0.1
1,776,909	-		RALBFv3_RS08040	0.61	+0.7
1,776,912	+		RALBFv3_RS08040	0.61	+0.8
1,776,912	+		RALBFv3_RS08040	0.61	-1.1
1,776,912	+		RALBFv3_RS08040	0.61	+0.8
1,776,912	+		RALBFv3_RS08040	0.61	-1.9
1,776,913	-		RALBFv3_RS08040	0.61	+0.1
1,776,913	-		RALBFv3_RS08040	0.61	-1.4
1,776,913	-		RALBFv3_RS08040	0.61	-0.4
1,776,913	-		RALBFv3_RS08040	0.61	+0.1
1,776,913	-		RALBFv3_RS08040	0.61	-0.5
1,777,069	+		RALBFv3_RS08040	0.68	-0.9
1,777,069	+		RALBFv3_RS08040	0.68	-0.2
1,777,069	+		RALBFv3_RS08040	0.68	+4.0
1,777,069	+		RALBFv3_RS08040	0.68	-1.8
1,777,212	+		RALBFv3_RS08040	0.75	-1.2
1,777,212	+		RALBFv3_RS08040	0.75	-1.0
1,777,212	+		RALBFv3_RS08040	0.75	+0.5
1,777,213	-		RALBFv3_RS08040	0.75	-0.7
1,777,213	-		RALBFv3_RS08040	0.75	+0.6
1,777,213	-		RALBFv3_RS08040	0.75	+1.5
1,777,213	-		RALBFv3_RS08040	0.75	-1.7
1,777,213	-		RALBFv3_RS08040	0.75	+1.0
1,777,213	-		RALBFv3_RS08040	0.75	-1.2
1,777,213	-		RALBFv3_RS08040	0.75	-0.4
1,777,285	-		RALBFv3_RS08040	0.79	-0.8
1,777,285	-		RALBFv3_RS08040	0.79	-0.7
1,777,352	+		RALBFv3_RS08040	0.82	+1.7
1,777,353	-		RALBFv3_RS08040	0.82	-0.4
1,777,353	-		RALBFv3_RS08040	0.82	+0.1
1,777,368	+		RALBFv3_RS08040	0.83	+0.1
1,777,368	+		RALBFv3_RS08040	0.83	+0.2
1,777,368	+		RALBFv3_RS08040	0.83	-0.7
1,777,368	+		RALBFv3_RS08040	0.83	+0.3
1,777,369	-		RALBFv3_RS08040	0.83	-0.6
1,777,370	+		RALBFv3_RS08040	0.83	+2.4
1,777,370	+		RALBFv3_RS08040	0.83	+4.0
1,777,370	+		RALBFv3_RS08040	0.83	+1.0
1,777,370	+		RALBFv3_RS08040	0.83	-0.9
1,777,370	+		RALBFv3_RS08040	0.83	-1.0
1,777,370	+		RALBFv3_RS08040	0.83	-1.6
1,777,371	-		RALBFv3_RS08040	0.83	-0.5
1,777,371	-		RALBFv3_RS08040	0.83	-0.0
1,777,431	+		RALBFv3_RS08040	0.86	-0.3
1,777,432	-		RALBFv3_RS08040	0.86	-1.3
1,777,432	-		RALBFv3_RS08040	0.86	+0.9
1,777,440	+		RALBFv3_RS08040	0.86	-0.9
1,777,440	+		RALBFv3_RS08040	0.86	-0.1
1,777,440	+		RALBFv3_RS08040	0.86	-1.9
1,777,440	+		RALBFv3_RS08040	0.86	-0.5
1,777,440	+		RALBFv3_RS08040	0.86	+2.8
1,777,440	+		RALBFv3_RS08040	0.86	-1.0
1,777,440	+		RALBFv3_RS08040	0.86	-1.3
1,777,441	-		RALBFv3_RS08040	0.86	-0.6
1,777,441	-		RALBFv3_RS08040	0.86	-0.7
1,777,441	-		RALBFv3_RS08040	0.86	+0.8
1,777,441	-		RALBFv3_RS08040	0.86	-1.6
1,777,503	+		RALBFv3_RS08040	0.89	+1.2
1,777,616	+				-2.0
1,777,616	+				+0.8
1,777,650	+				-0.8
1,777,650	+				-1.2
1,777,650	+				-2.6
1,777,651	-				-0.8
1,777,651	-				+1.3
1,777,651	-				+0.9
1,777,651	-				+0.7
1,777,651	-				+1.1
1,777,680	+				+1.5
1,777,690	-				-0.8
1,777,690	-				+0.6
1,777,754	-				+0.3
1,778,027	+		RALBFv3_RS08045	0.26	-0.7
1,778,027	+		RALBFv3_RS08045	0.26	+0.3
1,778,028	-		RALBFv3_RS08045	0.26	+0.4
1,778,028	-		RALBFv3_RS08045	0.26	+0.3
1,778,028	-		RALBFv3_RS08045	0.26	-0.3
1,778,028	-		RALBFv3_RS08045	0.26	-0.0
1,778,028	-		RALBFv3_RS08045	0.26	-0.2
1,778,378	+		RALBFv3_RS08045	0.56	-0.5
1,778,379	-		RALBFv3_RS08045	0.56	+0.9
1,778,647	+		RALBFv3_RS08045	0.79	-1.1
1,778,755	-		RALBFv3_RS08045	0.88	-2.3
1,778,788	+				+1.4
1,778,789	-				-0.0
1,778,998	+		RALBFv3_RS08050	0.10	+0.4
1,779,095	+		RALBFv3_RS08050	0.21	-0.3
1,779,095	+		RALBFv3_RS08050	0.21	-0.6
1,779,134	+		RALBFv3_RS08050	0.25	+0.5
1,779,134	+		RALBFv3_RS08050	0.25	-0.9
1,779,134	+		RALBFv3_RS08050	0.25	-0.3
1,779,134	+		RALBFv3_RS08050	0.25	-1.4
1,779,135	-		RALBFv3_RS08050	0.25	-0.1
1,779,135	-		RALBFv3_RS08050	0.25	-0.6
1,779,135	-		RALBFv3_RS08050	0.25	+0.1
1,779,135	-		RALBFv3_RS08050	0.25	-0.3
1,779,136	+		RALBFv3_RS08050	0.25	-0.4
1,779,251	+		RALBFv3_RS08050	0.38	-0.1
1,779,251	+		RALBFv3_RS08050	0.38	-1.2
1,779,251	+		RALBFv3_RS08050	0.38	+0.6
1,779,251	+		RALBFv3_RS08050	0.38	+4.0
1,779,251	+		RALBFv3_RS08050	0.38	+3.0
1,779,251	+		RALBFv3_RS08050	0.38	+1.8
1,779,252	-		RALBFv3_RS08050	0.38	+2.0
1,779,252	-		RALBFv3_RS08050	0.38	-0.9
1,779,252	-		RALBFv3_RS08050	0.38	-0.1
1,779,252	-		RALBFv3_RS08050	0.38	-0.0
1,779,252	-		RALBFv3_RS08050	0.38	-0.3
1,779,400	+		RALBFv3_RS08050	0.55	+0.4
1,779,400	+		RALBFv3_RS08050	0.55	-0.8
1,779,401	-		RALBFv3_RS08050	0.55	+1.4
1,779,401	-		RALBFv3_RS08050	0.55	-0.1
1,779,401	-		RALBFv3_RS08050	0.55	-0.4
1,779,435	+		RALBFv3_RS08050	0.59	-2.3
1,779,440	+		RALBFv3_RS08050	0.59	-0.3
1,779,441	+		RALBFv3_RS08050	0.59	-0.5
1,779,441	+		RALBFv3_RS08050	0.59	-0.0
1,779,441	+		RALBFv3_RS08050	0.59	-1.5
1,779,442	-		RALBFv3_RS08050	0.59	-2.5
1,779,442	-		RALBFv3_RS08050	0.59	+4.0
1,779,442	-		RALBFv3_RS08050	0.59	-1.2
1,779,442	-		RALBFv3_RS08050	0.59	+2.4
1,779,442	-		RALBFv3_RS08050	0.59	-0.4
1,779,442	-		RALBFv3_RS08050	0.59	+0.1
1,779,460	+		RALBFv3_RS08050	0.61	+2.2
1,779,620	-		RALBFv3_RS08050	0.79	-0.4