Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS04790

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS04780 and RALBFv3_RS04785 overlap by 1 nucleotidesRALBFv3_RS04785 and RALBFv3_RS04790 are separated by 30 nucleotidesRALBFv3_RS04790 and RALBFv3_RS04795 are separated by 156 nucleotides RALBFv3_RS04780: RALBFv3_RS04780 - isoleucine--tRNA ligase, at 1,067,356 to 1,070,235 _RS04780 RALBFv3_RS04785: RALBFv3_RS04785 - lipoprotein signal peptidase, at 1,070,235 to 1,070,759 _RS04785 RALBFv3_RS04790: RALBFv3_RS04790 - YdcF family protein, at 1,070,790 to 1,071,362 _RS04790 RALBFv3_RS04795: RALBFv3_RS04795 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 1,071,519 to 1,072,724 _RS04795 Position (kb) 1070 1071 1072Strain fitness (log2 ratio) -1 0 1at 1070.806 kb on + strandat 1070.851 kb on + strand, within RALBFv3_RS04790at 1070.852 kb on - strand, within RALBFv3_RS04790at 1070.876 kb on + strand, within RALBFv3_RS04790at 1071.163 kb on + strand, within RALBFv3_RS04790at 1071.163 kb on + strand, within RALBFv3_RS04790at 1071.464 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
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1,070,806 + -0.5
1,070,851 + RALBFv3_RS04790 0.11 -0.5
1,070,852 - RALBFv3_RS04790 0.11 -0.4
1,070,876 + RALBFv3_RS04790 0.15 -0.4
1,071,163 + RALBFv3_RS04790 0.65 -0.3
1,071,163 + RALBFv3_RS04790 0.65 -0.6
1,071,464 + +0.7

Or see this region's nucleotide sequence