Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02760

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02755 and RALBFv3_RS02760 are separated by 18 nucleotidesRALBFv3_RS02760 and RALBFv3_RS02765 are separated by 359 nucleotides RALBFv3_RS02755: RALBFv3_RS02755 - phosphotransferase family protein, at 613,229 to 614,314 _RS02755 RALBFv3_RS02760: RALBFv3_RS02760 - glyoxalase, at 614,333 to 614,743 _RS02760 RALBFv3_RS02765: RALBFv3_RS02765 - LysR family transcriptional regulator, at 615,103 to 616,077 _RS02765 Position (kb) 614 615Strain fitness (log2 ratio) -2 -1 0 1 2at 613.427 kb on + strand, within RALBFv3_RS02755at 613.428 kb on - strand, within RALBFv3_RS02755at 613.428 kb on - strand, within RALBFv3_RS02755at 613.590 kb on - strand, within RALBFv3_RS02755at 613.793 kb on + strand, within RALBFv3_RS02755at 613.793 kb on + strand, within RALBFv3_RS02755at 613.794 kb on - strand, within RALBFv3_RS02755at 614.100 kb on - strand, within RALBFv3_RS02755at 614.100 kb on - strand, within RALBFv3_RS02755at 614.165 kb on + strand, within RALBFv3_RS02755at 614.743 kb on + strandat 614.743 kb on + strandat 614.744 kb on - strandat 614.744 kb on - strandat 615.070 kb on - strandat 615.613 kb on + strand, within RALBFv3_RS02765

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
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613,427 + RALBFv3_RS02755 0.18 -1.1
613,428 - RALBFv3_RS02755 0.18 -0.1
613,428 - RALBFv3_RS02755 0.18 +1.2
613,590 - RALBFv3_RS02755 0.33 -1.1
613,793 + RALBFv3_RS02755 0.52 -0.9
613,793 + RALBFv3_RS02755 0.52 -0.9
613,794 - RALBFv3_RS02755 0.52 -2.6
614,100 - RALBFv3_RS02755 0.80 -0.5
614,100 - RALBFv3_RS02755 0.80 +2.5
614,165 + RALBFv3_RS02755 0.86 -1.1
614,743 + -1.0
614,743 + -0.1
614,744 - -0.9
614,744 - -1.3
615,070 - +2.7
615,613 + RALBFv3_RS02765 0.52 -0.5

Or see this region's nucleotide sequence