Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02435

Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS02430 and RALBFv3_RS02435 are separated by 864 nucleotidesRALBFv3_RS02435 and RALBFv3_RS02440 are separated by 347 nucleotides RALBFv3_RS02430: RALBFv3_RS02430 - N-acetyltransferase, at 542,756 to 543,283 _RS02430 RALBFv3_RS02435: RALBFv3_RS02435 - tRNA-Ser, at 544,148 to 544,238 _RS02435 RALBFv3_RS02440: RALBFv3_RS02440 - cation acetate symporter, at 544,586 to 546,652 _RS02440 Position (kb) 544 545Strain fitness (log2 ratio) -1 0 1 2 3at 543.263 kb on + strandat 543.263 kb on + strandat 543.264 kb on - strandat 543.883 kb on + strandat 543.883 kb on + strandat 543.884 kb on - strandat 544.133 kb on + strandat 544.134 kb on - strandat 544.136 kb on + strandat 544.364 kb on - strandat 544.605 kb on + strandat 544.767 kb on + strandat 544.782 kb on + strandat 544.782 kb on + strandat 544.782 kb on + strandat 544.783 kb on - strandat 544.783 kb on - strandat 544.783 kb on - strandat 544.783 kb on - strandat 544.785 kb on + strandat 545.040 kb on + strand, within RALBFv3_RS02440at 545.040 kb on + strand, within RALBFv3_RS02440at 545.040 kb on + strand, within RALBFv3_RS02440at 545.040 kb on + strand, within RALBFv3_RS02440at 545.040 kb on + strand, within RALBFv3_RS02440at 545.041 kb on - strand, within RALBFv3_RS02440at 545.142 kb on + strand, within RALBFv3_RS02440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
remove
543,263 + -0.5
543,263 + -0.3
543,264 - -0.4
543,883 + -1.2
543,883 + +1.8
543,884 - +0.1
544,133 + +0.9
544,134 - -0.4
544,136 + +3.3
544,364 - +0.3
544,605 + -1.1
544,767 + +0.5
544,782 + +0.6
544,782 + -1.0
544,782 + -1.2
544,783 - -0.3
544,783 - +0.6
544,783 - +0.1
544,783 - -0.0
544,785 + -0.7
545,040 + RALBFv3_RS02440 0.22 -0.8
545,040 + RALBFv3_RS02440 0.22 +0.2
545,040 + RALBFv3_RS02440 0.22 -0.4
545,040 + RALBFv3_RS02440 0.22 -0.6
545,040 + RALBFv3_RS02440 0.22 +0.3
545,041 - RALBFv3_RS02440 0.22 -1.2
545,142 + RALBFv3_RS02440 0.27 +0.1

Or see this region's nucleotide sequence