Experiment: Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00590 and RALBFv3_RS00595 are separated by 107 nucleotides RALBFv3_RS00595 and RALBFv3_RS00600 are separated by 4 nucleotides
RALBFv3_RS00590: RALBFv3_RS00590 - MBL fold metallo-hydrolase, at 132,041 to 132,955
_RS00590
RALBFv3_RS00595: RALBFv3_RS00595 - LysR family transcriptional regulator, at 133,063 to 133,965
_RS00595
RALBFv3_RS00600: RALBFv3_RS00600 - MFS transporter, at 133,970 to 135,173
_RS00600
Position (kb) 133
134 Strain fitness (log2 ratio) -1
0
1
2
3 at 132.108 kb on - strand at 132.216 kb on + strand, within RALBFv3_RS00590 at 132.432 kb on + strand, within RALBFv3_RS00590 at 132.672 kb on + strand, within RALBFv3_RS00590 at 132.676 kb on - strand, within RALBFv3_RS00590 at 132.852 kb on + strand, within RALBFv3_RS00590 at 132.998 kb on - strand at 132.998 kb on - strand at 133.028 kb on - strand at 133.168 kb on + strand, within RALBFv3_RS00595 at 133.402 kb on + strand, within RALBFv3_RS00595 at 133.402 kb on + strand, within RALBFv3_RS00595 at 133.415 kb on - strand, within RALBFv3_RS00595 at 133.574 kb on - strand, within RALBFv3_RS00595 at 133.574 kb on - strand, within RALBFv3_RS00595 at 133.574 kb on - strand, within RALBFv3_RS00595 at 133.636 kb on + strand, within RALBFv3_RS00595 at 133.637 kb on - strand, within RALBFv3_RS00595 at 133.642 kb on + strand, within RALBFv3_RS00595 at 133.643 kb on - strand, within RALBFv3_RS00595 at 134.215 kb on + strand, within RALBFv3_RS00600 at 134.215 kb on + strand, within RALBFv3_RS00600 at 134.216 kb on - strand, within RALBFv3_RS00600 at 134.216 kb on - strand, within RALBFv3_RS00600 at 134.216 kb on - strand, within RALBFv3_RS00600 at 134.219 kb on + strand, within RALBFv3_RS00600 at 134.219 kb on + strand, within RALBFv3_RS00600 at 134.220 kb on - strand, within RALBFv3_RS00600 at 134.512 kb on + strand, within RALBFv3_RS00600 at 134.513 kb on - strand, within RALBFv3_RS00600
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=banana; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=18days remove 132,108 - -0.3 132,216 + RALBFv3_RS00590 0.19 -0.5 132,432 + RALBFv3_RS00590 0.43 +1.7 132,672 + RALBFv3_RS00590 0.69 -0.8 132,676 - RALBFv3_RS00590 0.69 +1.7 132,852 + RALBFv3_RS00590 0.89 +0.0 132,998 - -0.8 132,998 - -0.4 133,028 - -0.8 133,168 + RALBFv3_RS00595 0.12 +0.5 133,402 + RALBFv3_RS00595 0.38 -0.8 133,402 + RALBFv3_RS00595 0.38 +1.7 133,415 - RALBFv3_RS00595 0.39 -0.5 133,574 - RALBFv3_RS00595 0.57 -1.0 133,574 - RALBFv3_RS00595 0.57 -1.2 133,574 - RALBFv3_RS00595 0.57 -0.5 133,636 + RALBFv3_RS00595 0.63 -0.1 133,637 - RALBFv3_RS00595 0.64 +0.1 133,642 + RALBFv3_RS00595 0.64 +0.5 133,643 - RALBFv3_RS00595 0.64 -1.0 134,215 + RALBFv3_RS00600 0.20 -0.2 134,215 + RALBFv3_RS00600 0.20 +1.1 134,216 - RALBFv3_RS00600 0.20 -0.4 134,216 - RALBFv3_RS00600 0.20 +2.1 134,216 - RALBFv3_RS00600 0.20 +0.3 134,219 + RALBFv3_RS00600 0.21 +0.0 134,219 + RALBFv3_RS00600 0.21 -1.4 134,220 - RALBFv3_RS00600 0.21 -0.0 134,512 + RALBFv3_RS00600 0.45 +1.2 134,513 - RALBFv3_RS00600 0.45 +3.7
Or see this region's nucleotide sequence