Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00440 and PGA1_65p00450 are separated by 307 nucleotides PGA1_65p00450 and PGA1_65p00460 are separated by 84 nucleotides
PGA1_65p00440: PGA1_65p00440 - UDP-glucuronate 5'-epimerase, at 59,496 to 60,506
_65p00440
PGA1_65p00450: PGA1_65p00450 - UDP-glucose 6-dehydrogenase Ugd, at 60,814 to 62,118
_65p00450
PGA1_65p00460: PGA1_65p00460 - putative plasmid partition protein B, at 62,203 to 63,330
_65p00460
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -2
-1
0
1
2 at 60.201 kb on + strand, within PGA1_65p00440 at 60.503 kb on - strand at 60.524 kb on - strand at 60.524 kb on - strand at 60.529 kb on - strand at 60.531 kb on + strand at 60.764 kb on - strand at 60.798 kb on + strand at 60.828 kb on + strand at 60.886 kb on + strand at 60.894 kb on - strand at 61.149 kb on + strand, within PGA1_65p00450 at 61.149 kb on + strand, within PGA1_65p00450 at 61.207 kb on + strand, within PGA1_65p00450 at 61.644 kb on - strand, within PGA1_65p00450 at 61.719 kb on + strand, within PGA1_65p00450 at 61.755 kb on + strand, within PGA1_65p00450 at 61.817 kb on + strand, within PGA1_65p00450 at 61.837 kb on - strand, within PGA1_65p00450 at 61.850 kb on + strand, within PGA1_65p00450 at 61.918 kb on - strand, within PGA1_65p00450 at 62.021 kb on + strand at 62.099 kb on + strand at 62.486 kb on - strand, within PGA1_65p00460
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 60,201 + PGA1_65p00440 0.70 +1.8 60,503 - -0.2 60,524 - -0.7 60,524 - +0.5 60,529 - +0.9 60,531 + -1.0 60,764 - +0.5 60,798 + +0.5 60,828 + +0.8 60,886 + +0.9 60,894 - +1.3 61,149 + PGA1_65p00450 0.26 +0.0 61,149 + PGA1_65p00450 0.26 +1.4 61,207 + PGA1_65p00450 0.30 +0.3 61,644 - PGA1_65p00450 0.64 +0.5 61,719 + PGA1_65p00450 0.69 -1.3 61,755 + PGA1_65p00450 0.72 +1.3 61,817 + PGA1_65p00450 0.77 +0.9 61,837 - PGA1_65p00450 0.78 -0.3 61,850 + PGA1_65p00450 0.79 +0.2 61,918 - PGA1_65p00450 0.85 +0.1 62,021 + -0.2 62,099 + -2.0 62,486 - PGA1_65p00460 0.25 +0.3
Or see this region's nucleotide sequence