Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00350

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00340 and PGA1_65p00350 are separated by 934 nucleotidesPGA1_65p00350 and PGA1_65p00360 are separated by 148 nucleotides PGA1_65p00340: PGA1_65p00340 - Sulfotransferase family., at 44,811 to 46,031 _65p00340 PGA1_65p00350: PGA1_65p00350 - hemolysin-like protein, at 46,966 to 48,567 _65p00350 PGA1_65p00360: PGA1_65p00360 - glycosyl transferase domain-containing protein, at 48,716 to 51,433 _65p00360 Position (kb) 46 47 48 49Strain fitness (log2 ratio) -1 0 1 2 3at 46.055 kb on - strandat 46.075 kb on - strandat 46.075 kb on - strandat 46.085 kb on - strandat 46.163 kb on - strandat 46.229 kb on + strandat 46.229 kb on + strandat 46.229 kb on + strandat 46.237 kb on - strandat 46.237 kb on - strandat 46.264 kb on + strandat 46.264 kb on + strandat 46.264 kb on + strandat 46.272 kb on - strandat 46.276 kb on + strandat 46.284 kb on - strandat 46.322 kb on + strandat 46.336 kb on + strandat 46.355 kb on - strandat 46.366 kb on + strandat 46.530 kb on - strandat 46.537 kb on + strandat 46.537 kb on + strandat 46.537 kb on + strandat 46.537 kb on + strandat 46.537 kb on + strandat 46.545 kb on - strandat 46.545 kb on - strandat 46.561 kb on + strandat 46.566 kb on + strandat 46.569 kb on - strandat 46.571 kb on + strandat 46.579 kb on - strandat 46.665 kb on + strandat 46.665 kb on + strandat 46.684 kb on - strandat 46.750 kb on - strandat 46.797 kb on - strandat 46.802 kb on - strandat 46.846 kb on + strandat 46.854 kb on - strandat 46.881 kb on + strandat 46.893 kb on + strandat 46.901 kb on - strandat 46.909 kb on + strandat 46.919 kb on + strandat 46.949 kb on + strandat 46.949 kb on + strandat 46.955 kb on - strandat 46.983 kb on + strandat 46.990 kb on + strandat 46.998 kb on - strandat 46.998 kb on - strandat 47.033 kb on - strandat 47.068 kb on + strandat 47.106 kb on + strandat 47.106 kb on + strandat 47.114 kb on - strandat 47.125 kb on - strandat 47.135 kb on - strand, within PGA1_65p00350at 47.144 kb on + strand, within PGA1_65p00350at 47.152 kb on - strand, within PGA1_65p00350at 47.200 kb on + strand, within PGA1_65p00350at 47.205 kb on + strand, within PGA1_65p00350at 47.213 kb on - strand, within PGA1_65p00350at 47.228 kb on + strand, within PGA1_65p00350at 47.236 kb on - strand, within PGA1_65p00350at 47.309 kb on + strand, within PGA1_65p00350at 47.314 kb on + strand, within PGA1_65p00350at 47.314 kb on + strand, within PGA1_65p00350at 47.317 kb on - strand, within PGA1_65p00350at 47.322 kb on - strand, within PGA1_65p00350at 47.322 kb on - strand, within PGA1_65p00350at 47.322 kb on - strand, within PGA1_65p00350at 47.322 kb on - strand, within PGA1_65p00350at 47.322 kb on - strand, within PGA1_65p00350at 47.322 kb on - strand, within PGA1_65p00350at 47.322 kb on - strand, within PGA1_65p00350at 47.385 kb on + strand, within PGA1_65p00350at 47.393 kb on + strand, within PGA1_65p00350at 47.411 kb on - strand, within PGA1_65p00350at 47.421 kb on + strand, within PGA1_65p00350at 47.473 kb on - strand, within PGA1_65p00350at 47.538 kb on - strand, within PGA1_65p00350at 47.568 kb on + strand, within PGA1_65p00350at 47.597 kb on + strand, within PGA1_65p00350at 47.605 kb on - strand, within PGA1_65p00350at 47.622 kb on + strand, within PGA1_65p00350at 47.627 kb on - strand, within PGA1_65p00350at 47.629 kb on + strand, within PGA1_65p00350at 47.629 kb on + strand, within PGA1_65p00350at 47.630 kb on - strand, within PGA1_65p00350at 47.630 kb on - strand, within PGA1_65p00350at 47.637 kb on - strand, within PGA1_65p00350at 47.764 kb on + strand, within PGA1_65p00350at 48.034 kb on + strand, within PGA1_65p00350at 48.034 kb on + strand, within PGA1_65p00350at 48.184 kb on - strand, within PGA1_65p00350at 48.272 kb on - strand, within PGA1_65p00350at 48.431 kb on - strandat 48.431 kb on - strandat 48.511 kb on - strandat 48.535 kb on + strandat 48.584 kb on - strandat 48.590 kb on - strandat 48.714 kb on + strandat 48.714 kb on + strandat 48.721 kb on - strandat 48.722 kb on - strandat 48.722 kb on - strandat 48.722 kb on - strandat 48.886 kb on + strandat 49.051 kb on + strand, within PGA1_65p00360at 49.059 kb on - strand, within PGA1_65p00360at 49.097 kb on + strand, within PGA1_65p00360at 49.153 kb on + strand, within PGA1_65p00360at 49.368 kb on - strand, within PGA1_65p00360at 49.398 kb on - strand, within PGA1_65p00360at 49.455 kb on + strand, within PGA1_65p00360at 49.455 kb on + strand, within PGA1_65p00360

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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46,055 - +1.5
46,075 - +1.1
46,075 - +0.4
46,085 - +0.4
46,163 - -1.2
46,229 + +0.3
46,229 + -0.4
46,229 + +0.1
46,237 - +1.5
46,237 - +1.5
46,264 + -1.0
46,264 + +0.3
46,264 + -1.4
46,272 - +0.3
46,276 + +2.9
46,284 - +0.3
46,322 + +0.1
46,336 + +0.9
46,355 - +0.2
46,366 + +0.7
46,530 - -0.1
46,537 + +0.1
46,537 + -0.0
46,537 + +0.7
46,537 + -0.7
46,537 + +0.5
46,545 - +1.9
46,545 - +0.6
46,561 + -0.0
46,566 + -1.2
46,569 - +1.3
46,571 + -1.2
46,579 - +0.5
46,665 + +0.1
46,665 + -0.8
46,684 - +2.1
46,750 - -1.7
46,797 - -0.3
46,802 - -0.8
46,846 + -0.7
46,854 - +2.3
46,881 + -0.7
46,893 + -0.0
46,901 - -0.5
46,909 + -0.1
46,919 + -0.0
46,949 + +1.9
46,949 + +0.5
46,955 - -0.2
46,983 + +0.7
46,990 + +0.0
46,998 - +0.5
46,998 - +0.4
47,033 - +0.5
47,068 + +0.4
47,106 + +1.3
47,106 + +0.9
47,114 - -0.3
47,125 - +0.7
47,135 - PGA1_65p00350 0.11 +0.8
47,144 + PGA1_65p00350 0.11 +1.0
47,152 - PGA1_65p00350 0.12 -0.1
47,200 + PGA1_65p00350 0.15 +0.3
47,205 + PGA1_65p00350 0.15 +0.1
47,213 - PGA1_65p00350 0.15 +1.3
47,228 + PGA1_65p00350 0.16 +1.3
47,236 - PGA1_65p00350 0.17 +0.6
47,309 + PGA1_65p00350 0.21 +1.1
47,314 + PGA1_65p00350 0.22 +0.3
47,314 + PGA1_65p00350 0.22 -0.0
47,317 - PGA1_65p00350 0.22 -0.7
47,322 - PGA1_65p00350 0.22 +0.4
47,322 - PGA1_65p00350 0.22 -0.3
47,322 - PGA1_65p00350 0.22 +0.8
47,322 - PGA1_65p00350 0.22 +0.6
47,322 - PGA1_65p00350 0.22 +0.4
47,322 - PGA1_65p00350 0.22 +1.2
47,322 - PGA1_65p00350 0.22 -0.1
47,385 + PGA1_65p00350 0.26 +1.0
47,393 + PGA1_65p00350 0.27 +1.0
47,411 - PGA1_65p00350 0.28 +0.6
47,421 + PGA1_65p00350 0.28 +0.2
47,473 - PGA1_65p00350 0.32 +0.7
47,538 - PGA1_65p00350 0.36 +0.3
47,568 + PGA1_65p00350 0.38 +0.7
47,597 + PGA1_65p00350 0.39 +0.3
47,605 - PGA1_65p00350 0.40 +0.1
47,622 + PGA1_65p00350 0.41 +1.5
47,627 - PGA1_65p00350 0.41 +1.0
47,629 + PGA1_65p00350 0.41 +1.0
47,629 + PGA1_65p00350 0.41 +0.1
47,630 - PGA1_65p00350 0.41 -0.3
47,630 - PGA1_65p00350 0.41 +0.3
47,637 - PGA1_65p00350 0.42 +0.6
47,764 + PGA1_65p00350 0.50 +1.2
48,034 + PGA1_65p00350 0.67 +0.8
48,034 + PGA1_65p00350 0.67 -0.3
48,184 - PGA1_65p00350 0.76 -0.3
48,272 - PGA1_65p00350 0.82 +1.5
48,431 - +0.7
48,431 - +0.3
48,511 - -1.2
48,535 + +1.9
48,584 - -0.6
48,590 - +0.8
48,714 + +0.3
48,714 + +0.8
48,721 - -0.3
48,722 - -0.4
48,722 - +0.2
48,722 - -0.7
48,886 + +0.3
49,051 + PGA1_65p00360 0.12 +1.0
49,059 - PGA1_65p00360 0.13 +0.4
49,097 + PGA1_65p00360 0.14 +0.7
49,153 + PGA1_65p00360 0.16 -1.6
49,368 - PGA1_65p00360 0.24 -0.0
49,398 - PGA1_65p00360 0.25 -0.5
49,455 + PGA1_65p00360 0.27 +0.8
49,455 + PGA1_65p00360 0.27 +0.5

Or see this region's nucleotide sequence