Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01260 and PGA1_262p01270 are separated by 37 nucleotides PGA1_262p01270 and PGA1_262p01280 are separated by 2 nucleotides PGA1_262p01280 and PGA1_262p01290 are separated by 97 nucleotides
PGA1_262p01260: PGA1_262p01260 - copper-containing nitrite reductase NirK, at 137,242 to 138,465
_262p01260
PGA1_262p01270: PGA1_262p01270 - Uncharacterized conserved protein, at 138,503 to 139,261
_262p01270
PGA1_262p01280: PGA1_262p01280 - transcriptional regulator, TetR family, at 139,264 to 139,872
_262p01280
PGA1_262p01290: PGA1_262p01290 - transcriptional regulator, AraC family, at 139,970 to 140,977
_262p01290
Position (kb) 138
139
140 Strain fitness (log2 ratio) -1
0
1 at 137.830 kb on + strand, within PGA1_262p01260 at 137.979 kb on + strand, within PGA1_262p01260 at 137.987 kb on - strand, within PGA1_262p01260 at 138.061 kb on - strand, within PGA1_262p01260 at 138.344 kb on + strand at 138.383 kb on - strand at 138.827 kb on - strand, within PGA1_262p01270 at 138.827 kb on - strand, within PGA1_262p01270 at 138.850 kb on - strand, within PGA1_262p01270 at 139.092 kb on - strand, within PGA1_262p01270 at 139.151 kb on + strand, within PGA1_262p01270 at 139.579 kb on + strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.770 kb on - strand, within PGA1_262p01280 at 140.074 kb on - strand, within PGA1_262p01290 at 140.079 kb on - strand, within PGA1_262p01290 at 140.152 kb on + strand, within PGA1_262p01290 at 140.215 kb on - strand, within PGA1_262p01290 at 140.215 kb on - strand, within PGA1_262p01290
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 137,830 + PGA1_262p01260 0.48 -0.2 137,979 + PGA1_262p01260 0.60 +0.0 137,987 - PGA1_262p01260 0.61 +0.6 138,061 - PGA1_262p01260 0.67 -0.8 138,344 + -0.3 138,383 - -0.9 138,827 - PGA1_262p01270 0.43 +0.2 138,827 - PGA1_262p01270 0.43 +1.1 138,850 - PGA1_262p01270 0.46 -0.6 139,092 - PGA1_262p01270 0.78 +0.6 139,151 + PGA1_262p01270 0.85 +0.4 139,579 + PGA1_262p01280 0.52 +0.2 139,734 - PGA1_262p01280 0.77 -0.3 139,734 - PGA1_262p01280 0.77 -0.7 139,734 - PGA1_262p01280 0.77 -0.3 139,770 - PGA1_262p01280 0.83 -1.4 140,074 - PGA1_262p01290 0.10 +0.6 140,079 - PGA1_262p01290 0.11 -0.3 140,152 + PGA1_262p01290 0.18 +0.1 140,215 - PGA1_262p01290 0.24 +0.3 140,215 - PGA1_262p01290 0.24 -0.4
Or see this region's nucleotide sequence