Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31990

Experiment: Uridine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Uridine (N)
3,352,244	+				-0.2
3,352,244	+				-0.0
3,352,244	+				+0.0
3,352,244	+				-0.2
3,352,244	+				+0.2
3,352,252	-				+0.4
3,352,261	+				+0.8
3,352,276	-				+0.6
3,352,304	-				+0.1
3,352,305	+				+0.2
3,352,318	-				-0.1
3,352,538	+		PGA1_c31980	0.29	+2.7
3,352,557	+		PGA1_c31980	0.32	+1.0
3,352,575	-		PGA1_c31980	0.34	-0.4
3,352,595	-		PGA1_c31980	0.37	+1.2
3,352,630	-		PGA1_c31980	0.41	-1.1
3,352,637	+		PGA1_c31980	0.42	+0.1
3,352,686	+		PGA1_c31980	0.49	-0.7
3,352,720	+		PGA1_c31980	0.53	+0.8
3,352,732	+		PGA1_c31980	0.55	-0.7
3,352,749	-		PGA1_c31980	0.57	+1.0
3,352,774	+		PGA1_c31980	0.60	-0.1
3,352,822	+		PGA1_c31980	0.66	-0.4
3,352,845	+		PGA1_c31980	0.69	+0.5
3,352,853	-		PGA1_c31980	0.70	+1.0
3,352,853	-		PGA1_c31980	0.70	-0.7
3,352,913	+		PGA1_c31980	0.78	+0.2
3,352,918	+		PGA1_c31980	0.79	-0.1
3,352,921	-		PGA1_c31980	0.79	+0.9
3,352,923	+		PGA1_c31980	0.80	-0.5
3,352,923	+		PGA1_c31980	0.80	-0.1
3,352,923	+		PGA1_c31980	0.80	+0.3
3,352,923	+		PGA1_c31980	0.80	-0.7
3,352,923	+		PGA1_c31980	0.80	+0.9
3,352,923	+		PGA1_c31980	0.80	-0.4
3,352,923	+		PGA1_c31980	0.80	-0.4
3,352,923	+		PGA1_c31980	0.80	+0.6
3,352,923	+		PGA1_c31980	0.80	+0.4
3,352,923	+		PGA1_c31980	0.80	+0.1
3,352,923	+		PGA1_c31980	0.80	-1.0
3,352,923	+		PGA1_c31980	0.80	-0.8
3,352,923	+		PGA1_c31980	0.80	-0.4
3,352,923	+		PGA1_c31980	0.80	+1.6
3,352,923	+		PGA1_c31980	0.80	-0.1
3,352,923	+		PGA1_c31980	0.80	+0.2
3,352,923	+		PGA1_c31980	0.80	-0.3
3,352,923	+		PGA1_c31980	0.80	-0.7
3,352,923	+		PGA1_c31980	0.80	+0.6
3,352,923	+		PGA1_c31980	0.80	+0.3
3,352,931	-		PGA1_c31980	0.81	+0.4
3,352,931	-		PGA1_c31980	0.81	+0.5
3,352,931	-		PGA1_c31980	0.81	-0.4
3,352,931	-		PGA1_c31980	0.81	-0.4
3,352,931	-		PGA1_c31980	0.81	+0.1
3,352,931	-		PGA1_c31980	0.81	-0.1
3,352,931	-		PGA1_c31980	0.81	-1.3
3,352,931	-		PGA1_c31980	0.81	-1.5
3,352,931	-		PGA1_c31980	0.81	+0.5
3,352,931	-		PGA1_c31980	0.81	-0.2
3,352,931	-		PGA1_c31980	0.81	+0.6
3,352,965	-		PGA1_c31980	0.85	-0.6
3,353,013	+				-0.1
3,353,088	-				+0.1
3,353,128	+				-0.6
3,353,139	+				+0.1
3,353,165	+				-0.1
3,353,227	+				-0.4
3,353,239	+				-1.2
3,353,247	-				+0.6
3,353,299	-				+0.1
3,353,314	+		PGA1_c31990	0.11	-0.5
3,353,314	-		PGA1_c31990	0.11	+0.3
3,353,409	-		PGA1_c31990	0.20	+0.2
3,353,413	-		PGA1_c31990	0.21	+0.6
3,353,451	-		PGA1_c31990	0.24	-1.0
3,353,490	-		PGA1_c31990	0.28	+0.1
3,353,553	+		PGA1_c31990	0.34	+1.0
3,353,561	-		PGA1_c31990	0.35	-0.4
3,353,573	-		PGA1_c31990	0.36	+0.4
3,353,576	-		PGA1_c31990	0.36	+0.7
3,353,581	-		PGA1_c31990	0.37	+0.7
3,353,581	-		PGA1_c31990	0.37	+1.1
3,353,581	-		PGA1_c31990	0.37	-0.1
3,353,669	+		PGA1_c31990	0.45	-0.0
3,353,669	+		PGA1_c31990	0.45	+1.4
3,353,669	+		PGA1_c31990	0.45	+0.7
3,353,677	-		PGA1_c31990	0.46	+0.8
3,353,680	+		PGA1_c31990	0.46	-1.2
3,353,703	-		PGA1_c31990	0.49	+0.5
3,353,728	+		PGA1_c31990	0.51	+0.3
3,353,801	-		PGA1_c31990	0.58	-0.6
3,353,874	-		PGA1_c31990	0.65	-0.6
3,353,932	-		PGA1_c31990	0.71	-0.9
3,354,123	-		PGA1_c31990	0.89	-0.3
3,354,183	+				-0.1
3,354,183	+				-0.2
3,354,183	+				+0.1
3,354,183	+				+0.9
3,354,183	+				+1.3
3,354,186	-				-0.4
3,354,191	-				-0.2
3,354,193	+				+0.1
3,354,193	+				+0.5
3,354,193	+				+0.3
3,354,193	+				+0.3
3,354,193	+				+0.7
3,354,201	-				+0.3
3,354,201	-				-0.0
3,354,201	-				-2.4
3,354,201	-				-0.4
3,354,260	-				+0.8
3,354,293	+				-1.3
3,354,301	-				+2.3
3,354,301	-				+0.3
3,354,332	+				-0.1
3,354,352	+				-0.7
3,354,368	+				+0.0
3,354,412	-				-0.4
3,354,415	+				+0.6
3,354,422	-				+0.2
3,354,422	-				-0.6
3,354,422	-				-0.5
3,354,423	-				-0.3
3,354,440	-		PGA1_c32000	0.11	+0.2
3,354,450	+		PGA1_c32000	0.13	-0.9
3,354,452	-		PGA1_c32000	0.13	-0.8
3,354,525	-		PGA1_c32000	0.29	-0.5
3,354,557	+		PGA1_c32000	0.36	-1.6
3,354,558	-		PGA1_c32000	0.36	-0.7
3,354,589	+		PGA1_c32000	0.43	+1.7
3,354,589	+		PGA1_c32000	0.43	-0.9
3,354,589	+		PGA1_c32000	0.43	+0.7
3,354,597	-		PGA1_c32000	0.45	+0.3
3,354,639	+		PGA1_c32000	0.54	-0.7
3,354,639	+		PGA1_c32000	0.54	+0.2
3,354,642	-		PGA1_c32000	0.54	+0.1
3,354,644	+		PGA1_c32000	0.55	-0.9
3,354,647	-		PGA1_c32000	0.55	-0.2
3,354,647	-		PGA1_c32000	0.55	-0.3
3,354,665	-		PGA1_c32000	0.59	-0.1
3,354,683	+		PGA1_c32000	0.63	+2.0
3,354,683	+		PGA1_c32000	0.63	+0.3
3,354,683	+		PGA1_c32000	0.63	+1.0
3,354,691	-		PGA1_c32000	0.65	+1.1
3,354,757	-		PGA1_c32000	0.79	-0.3
3,354,793	+		PGA1_c32000	0.87	-1.2
3,354,801	-		PGA1_c32000	0.88	-0.8
3,354,801	-		PGA1_c32000	0.88	+0.6
3,354,815	-				+0.4
3,354,819	+				-1.0
3,354,853	+				-0.2
3,354,861	-				-0.4
3,354,884	-				+0.1
3,354,884	-				+0.5
3,354,945	-				-1.9
3,354,945	-				-1.4
3,354,946	-				+0.6
3,355,031	-				+0.2
3,355,039	-				-0.4
3,355,050	-				-1.2
3,355,088	+				-1.0
3,355,089	+				-1.0
3,355,182	-		PGA1_c32010	0.13	-1.2
3,355,182	-		PGA1_c32010	0.13	+0.7
3,355,193	+		PGA1_c32010	0.15	-1.0
3,355,193	+		PGA1_c32010	0.15	-0.9