Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28770

Experiment: Uridine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Uridine (N)
3,015,336	+		PGA1_c28760	0.13	+0.3
3,015,339	-		PGA1_c28760	0.13	-0.5
3,015,344	-		PGA1_c28760	0.14	-0.3
3,015,404	-		PGA1_c28760	0.21	+0.2
3,015,457	-		PGA1_c28760	0.28	+1.3
3,015,457	-		PGA1_c28760	0.28	-0.3
3,015,508	+		PGA1_c28760	0.34	-0.6
3,015,572	+		PGA1_c28760	0.42	-0.5
3,015,609	+		PGA1_c28760	0.47	-0.0
3,015,609	+		PGA1_c28760	0.47	+0.7
3,015,627	-		PGA1_c28760	0.49	+0.2
3,015,649	-		PGA1_c28760	0.52	+0.7
3,015,656	-		PGA1_c28760	0.53	+0.0
3,015,706	+		PGA1_c28760	0.59	-0.1
3,015,708	-		PGA1_c28760	0.59	+0.1
3,015,714	-		PGA1_c28760	0.60	+0.8
3,015,720	-		PGA1_c28760	0.61	-0.5
3,015,746	+		PGA1_c28760	0.64	+0.1
3,015,746	-		PGA1_c28760	0.64	-0.4
3,015,746	-		PGA1_c28760	0.64	+1.5
3,015,811	-		PGA1_c28760	0.72	-0.4
3,015,818	+		PGA1_c28760	0.73	+0.2
3,015,826	-		PGA1_c28760	0.74	-0.2
3,015,893	+		PGA1_c28760	0.82	-0.0
3,015,897	+		PGA1_c28760	0.83	-0.1
3,015,901	-		PGA1_c28760	0.83	+0.3
3,015,964	+				+0.4
3,016,053	-				+0.4
3,016,164	-				-0.8
3,016,188	+				-0.3
3,016,219	+				-0.3
3,016,219	+				-1.1
3,016,219	+				-1.2
3,016,219	+				-0.0
3,016,219	+				-1.2
3,016,222	-				+0.5
3,016,223	+				-1.4
3,016,227	-				+0.1
3,016,227	-				+0.6
3,016,227	-				-2.2
3,016,228	+				+0.1
3,016,233	+				-0.8
3,016,233	+				-2.3
3,016,233	+				+1.0
3,016,233	+				+0.1
3,016,233	+				+0.3
3,016,241	-				-0.7
3,016,241	-				-2.3
3,016,241	-				-0.4
3,016,241	-				-0.9
3,016,241	-				-0.3
3,016,241	-				-0.6
3,016,269	+				-0.4
3,016,269	+				-0.4
3,016,277	-				-2.4
3,016,278	-				-1.4
3,016,326	+				-1.2
3,016,326	+				-1.2
3,016,330	+				-1.8
3,016,331	+				-0.6
3,016,334	-				-1.6
3,016,342	+				-1.2
3,016,350	-				+0.2
3,016,350	-				-1.6
3,016,355	-				-1.0
3,016,408	-				-1.7
3,016,408	-				-2.1
3,016,540	+		PGA1_c28770	0.19	-1.6
3,016,559	+		PGA1_c28770	0.20	-0.4
3,016,567	-		PGA1_c28770	0.21	-2.6
3,016,659	+		PGA1_c28770	0.27	-2.1
3,016,660	+		PGA1_c28770	0.27	-1.5
3,016,667	-		PGA1_c28770	0.28	+0.1
3,016,744	+		PGA1_c28770	0.33	-2.5
3,016,744	+		PGA1_c28770	0.33	-1.5
3,016,744	+		PGA1_c28770	0.33	-1.4
3,016,744	+		PGA1_c28770	0.33	-3.3
3,016,746	-		PGA1_c28770	0.33	-1.8
3,016,752	-		PGA1_c28770	0.34	-2.6
3,016,752	-				-0.0
3,016,752	-		PGA1_c28770	0.34	-0.9
3,016,752	-		PGA1_c28770	0.34	-0.4
3,016,752	-		PGA1_c28770	0.34	-0.0
3,016,752	-		PGA1_c28770	0.34	-2.0
3,016,752	-		PGA1_c28770	0.34	-1.6
3,016,752	-		PGA1_c28770	0.34	-2.5
3,016,752	-		PGA1_c28770	0.34	-1.5
3,016,752	-		PGA1_c28770	0.34	-1.9
3,016,752	-		PGA1_c28770	0.34	-1.6
3,016,774	+		PGA1_c28770	0.35	-0.4
3,016,774	+		PGA1_c28770	0.35	-2.4
3,016,782	+		PGA1_c28770	0.36	-1.2
3,016,837	+		PGA1_c28770	0.40	-2.4
3,016,845	-		PGA1_c28770	0.41	-0.4
3,016,863	+		PGA1_c28770	0.42	-2.5
3,016,872	-		PGA1_c28770	0.42	-2.0
3,016,876	-		PGA1_c28770	0.43	-1.2
3,016,912	+		PGA1_c28770	0.45	-0.5
3,016,938	+		PGA1_c28770	0.47	-2.6
3,016,938	+		PGA1_c28770	0.47	-1.5
3,016,963	+		PGA1_c28770	0.49	-2.8
3,016,971	-		PGA1_c28770	0.50	-2.3
3,016,971	-		PGA1_c28770	0.50	-3.0
3,016,971	-		PGA1_c28770	0.50	-1.4
3,016,971	-		PGA1_c28770	0.50	-1.2
3,016,984	-		PGA1_c28770	0.51	-3.1
3,016,986	-		PGA1_c28770	0.51	-2.0
3,017,043	+		PGA1_c28770	0.55	-1.3
3,017,045	+		PGA1_c28770	0.55	-1.0
3,017,051	-		PGA1_c28770	0.55	-1.4
3,017,117	+		PGA1_c28770	0.60	-1.4
3,017,158	-		PGA1_c28770	0.63	-2.1
3,017,165	-		PGA1_c28770	0.63	-2.2
3,017,165	-		PGA1_c28770	0.63	-1.4
3,017,165	-		PGA1_c28770	0.63	-1.6
3,017,165	-		PGA1_c28770	0.63	-1.2
3,017,208	+		PGA1_c28770	0.67	+0.4
3,017,270	-		PGA1_c28770	0.71	-2.3
3,017,284	+		PGA1_c28770	0.72	-1.2
3,017,314	-		PGA1_c28770	0.74	-1.6
3,017,321	-		PGA1_c28770	0.75	-1.5
3,017,403	+		PGA1_c28770	0.80	-1.8
3,017,411	-		PGA1_c28770	0.81	-2.4
3,017,436	+		PGA1_c28770	0.83	-2.8
3,017,446	+		PGA1_c28770	0.84	-2.2
3,017,446	+		PGA1_c28770	0.84	-1.4
3,017,539	+				-1.5
3,017,630	+				-3.3
3,017,633	-				-1.9
3,017,646	+				-2.0
3,017,779	-				+0.3
3,017,779	-				+0.1
3,017,779	-				-0.2
3,017,779	-				+0.4
3,017,779	-				+0.3
3,017,779	-				-0.5
3,017,791	-				-0.7
3,017,829	+				+0.3
3,017,829	+				+1.7
3,017,829	+				+0.5
3,017,837	-				+0.3
3,017,929	+		PGA1_c28780	0.24	+0.4
3,017,955	+		PGA1_c28780	0.29	+0.6
3,017,963	-		PGA1_c28780	0.30	-0.9
3,017,963	-		PGA1_c28780	0.30	-0.9
3,018,020	+		PGA1_c28780	0.40	-0.6
3,018,085	+		PGA1_c28780	0.51	+0.5
3,018,093	+		PGA1_c28780	0.52	+0.9
3,018,093	+		PGA1_c28780	0.52	-0.0
3,018,098	+		PGA1_c28780	0.53	-1.3
3,018,098	+		PGA1_c28780	0.53	-0.4
3,018,167	-		PGA1_c28780	0.65	+0.2
3,018,227	-		PGA1_c28780	0.75	-1.2
3,018,282	-		PGA1_c28780	0.85	-1.1
3,018,374	-				+0.0
3,018,377	+				-0.2
3,018,385	-				+0.5
3,018,385	-				-0.9
3,018,404	-				+3.2
3,018,456	+				+1.4
3,018,456	+				+1.6
3,018,477	-				-0.2
3,018,527	-				+0.1
3,018,553	+				-1.0
3,018,574	-				+0.9
3,018,574	-				+0.0
3,018,610	+		PGA1_c28790	0.12	-0.6
3,018,610	+		PGA1_c28790	0.12	-0.6