Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23525

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23520 and PGA1_c23525 are separated by 64 nucleotidesPGA1_c23525 and PGA1_c23530 are separated by 224 nucleotides PGA1_c23520: PGA1_c23520 - trk system potassium uptake protein, at 2,450,761 to 2,452,209 _c23520 PGA1_c23525: PGA1_c23525 - hypothetical protein, at 2,452,274 to 2,453,032 _c23525 PGA1_c23530: PGA1_c23530 - Uncharacterized conserved protein, at 2,453,257 to 2,454,360 _c23530 Position (kb) 2452 2453 2454Strain fitness (log2 ratio) -2 -1 0 1at 2452.222 kb on + strandat 2452.302 kb on + strandat 2452.302 kb on + strandat 2452.310 kb on - strandat 2452.310 kb on - strandat 2452.371 kb on + strand, within PGA1_c23525at 2452.397 kb on - strand, within PGA1_c23525at 2452.432 kb on + strand, within PGA1_c23525at 2452.576 kb on + strand, within PGA1_c23525at 2452.584 kb on - strand, within PGA1_c23525at 2452.627 kb on + strand, within PGA1_c23525at 2452.637 kb on + strand, within PGA1_c23525at 2452.640 kb on - strand, within PGA1_c23525at 2452.659 kb on + strand, within PGA1_c23525at 2452.695 kb on - strand, within PGA1_c23525at 2452.733 kb on - strand, within PGA1_c23525at 2452.778 kb on - strand, within PGA1_c23525at 2452.794 kb on + strand, within PGA1_c23525at 2452.925 kb on + strand, within PGA1_c23525at 2452.997 kb on - strandat 2453.075 kb on + strandat 2453.080 kb on - strandat 2453.090 kb on + strandat 2453.098 kb on - strandat 2453.221 kb on + strandat 2453.254 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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2,452,222 + +0.5
2,452,302 + -1.1
2,452,302 + +0.2
2,452,310 - -2.0
2,452,310 - +0.3
2,452,371 + PGA1_c23525 0.13 -0.3
2,452,397 - PGA1_c23525 0.16 -0.8
2,452,432 + PGA1_c23525 0.21 -1.3
2,452,576 + PGA1_c23525 0.40 -0.4
2,452,584 - PGA1_c23525 0.41 -1.7
2,452,627 + PGA1_c23525 0.47 -1.0
2,452,637 + PGA1_c23525 0.48 -0.5
2,452,640 - PGA1_c23525 0.48 -0.7
2,452,659 + PGA1_c23525 0.51 -0.6
2,452,695 - PGA1_c23525 0.55 +0.5
2,452,733 - PGA1_c23525 0.60 -0.6
2,452,778 - PGA1_c23525 0.66 -0.2
2,452,794 + PGA1_c23525 0.69 +1.0
2,452,925 + PGA1_c23525 0.86 -0.4
2,452,997 - -2.1
2,453,075 + -0.7
2,453,080 - +1.0
2,453,090 + -0.0
2,453,098 - -0.3
2,453,221 + +1.3
2,453,254 + -0.2

Or see this region's nucleotide sequence