Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16450

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16440 and PGA1_c16450 are separated by 86 nucleotidesPGA1_c16450 and PGA1_c16460 overlap by 1 nucleotides PGA1_c16440: PGA1_c16440 - MFS transporter, at 1,704,296 to 1,705,522 _c16440 PGA1_c16450: PGA1_c16450 - Phytoene/squalene synthetase, at 1,705,609 to 1,706,388 _c16450 PGA1_c16460: PGA1_c16460 - 2-isopropylmalate synthase/homocitrate synthase-like protein, at 1,706,388 to 1,708,019 _c16460 Position (kb) 1705 1706 1707Strain fitness (log2 ratio) -1 0 1 2at 1704.756 kb on - strand, within PGA1_c16440at 1704.796 kb on - strand, within PGA1_c16440at 1704.917 kb on - strand, within PGA1_c16440at 1704.924 kb on + strand, within PGA1_c16440at 1704.985 kb on - strand, within PGA1_c16440at 1705.278 kb on + strand, within PGA1_c16440at 1705.286 kb on - strand, within PGA1_c16440at 1705.298 kb on + strand, within PGA1_c16440at 1705.337 kb on - strand, within PGA1_c16440at 1705.398 kb on + strand, within PGA1_c16440at 1705.415 kb on + strandat 1705.488 kb on - strandat 1705.498 kb on + strandat 1705.607 kb on + strandat 1705.613 kb on - strandat 1705.636 kb on + strandat 1705.649 kb on - strandat 1705.839 kb on + strand, within PGA1_c16450at 1706.105 kb on + strand, within PGA1_c16450at 1706.230 kb on + strand, within PGA1_c16450at 1706.230 kb on + strand, within PGA1_c16450at 1706.232 kb on - strand, within PGA1_c16450at 1706.541 kb on + strandat 1706.601 kb on + strand, within PGA1_c16460at 1706.630 kb on - strand, within PGA1_c16460at 1706.649 kb on - strand, within PGA1_c16460at 1706.743 kb on + strand, within PGA1_c16460at 1706.760 kb on - strand, within PGA1_c16460at 1706.791 kb on + strand, within PGA1_c16460at 1706.799 kb on - strand, within PGA1_c16460at 1706.799 kb on - strand, within PGA1_c16460at 1707.106 kb on + strand, within PGA1_c16460at 1707.261 kb on - strand, within PGA1_c16460at 1707.313 kb on + strand, within PGA1_c16460at 1707.316 kb on - strand, within PGA1_c16460at 1707.336 kb on - strand, within PGA1_c16460

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,704,756 - PGA1_c16440 0.37 -0.4
1,704,796 - PGA1_c16440 0.41 -0.5
1,704,917 - PGA1_c16440 0.51 -0.4
1,704,924 + PGA1_c16440 0.51 -0.2
1,704,985 - PGA1_c16440 0.56 -1.5
1,705,278 + PGA1_c16440 0.80 +0.4
1,705,286 - PGA1_c16440 0.81 +0.8
1,705,298 + PGA1_c16440 0.82 +0.4
1,705,337 - PGA1_c16440 0.85 -1.0
1,705,398 + PGA1_c16440 0.90 -0.5
1,705,415 + +0.0
1,705,488 - +0.7
1,705,498 + +0.4
1,705,607 + -0.7
1,705,613 - +0.3
1,705,636 + +1.5
1,705,649 - +1.5
1,705,839 + PGA1_c16450 0.29 +2.0
1,706,105 + PGA1_c16450 0.64 +0.1
1,706,230 + PGA1_c16450 0.80 +1.7
1,706,230 + PGA1_c16450 0.80 +0.8
1,706,232 - PGA1_c16450 0.80 +1.9
1,706,541 + -0.4
1,706,601 + PGA1_c16460 0.13 +0.7
1,706,630 - PGA1_c16460 0.15 -1.6
1,706,649 - PGA1_c16460 0.16 +0.2
1,706,743 + PGA1_c16460 0.22 +0.6
1,706,760 - PGA1_c16460 0.23 +0.3
1,706,791 + PGA1_c16460 0.25 +1.0
1,706,799 - PGA1_c16460 0.25 +0.2
1,706,799 - PGA1_c16460 0.25 -0.2
1,707,106 + PGA1_c16460 0.44 +0.5
1,707,261 - PGA1_c16460 0.53 -1.4
1,707,313 + PGA1_c16460 0.57 -0.5
1,707,316 - PGA1_c16460 0.57 +0.3
1,707,336 - PGA1_c16460 0.58 -0.1

Or see this region's nucleotide sequence