Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16350 and PGA1_c16360 are separated by 51 nucleotides PGA1_c16360 and PGA1_c16370 are separated by 94 nucleotides PGA1_c16370 and PGA1_c16380 overlap by 4 nucleotides PGA1_c16380 and PGA1_c16390 overlap by 4 nucleotides
PGA1_c16350: PGA1_c16350 - Disulfide bond formation protein DsbB, at 1,696,911 to 1,697,381
_c16350
PGA1_c16360: PGA1_c16360 - putative transriptional regulator, AsnC family, at 1,697,433 to 1,697,870
_c16360
PGA1_c16370: PGA1_c16370 - arginase ArcA, at 1,697,965 to 1,698,897
_c16370
PGA1_c16380: PGA1_c16380 - citrulline utilization hydrolase <small>(from data)</small>, at 1,698,894 to 1,699,823
_c16380
PGA1_c16390: PGA1_c16390 - ornithine cyclodeaminase ArcB, at 1,699,820 to 1,700,866
_c16390
Position (kb) 1697
1698
1699 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1697.231 kb on + strand, within PGA1_c16350 at 1697.344 kb on - strand at 1697.415 kb on + strand at 1697.423 kb on - strand at 1697.423 kb on - strand at 1697.423 kb on - strand at 1697.423 kb on - strand at 1697.426 kb on + strand at 1697.594 kb on + strand, within PGA1_c16360 at 1697.604 kb on + strand, within PGA1_c16360 at 1697.605 kb on + strand, within PGA1_c16360 at 1697.697 kb on - strand, within PGA1_c16360 at 1697.764 kb on - strand, within PGA1_c16360 at 1697.787 kb on + strand, within PGA1_c16360 at 1697.950 kb on - strand at 1697.959 kb on + strand at 1697.967 kb on - strand at 1697.977 kb on + strand at 1698.029 kb on + strand at 1698.103 kb on - strand, within PGA1_c16370 at 1698.157 kb on + strand, within PGA1_c16370 at 1698.165 kb on - strand, within PGA1_c16370 at 1698.373 kb on + strand, within PGA1_c16370 at 1698.406 kb on - strand, within PGA1_c16370 at 1698.526 kb on + strand, within PGA1_c16370 at 1698.532 kb on - strand, within PGA1_c16370 at 1698.556 kb on - strand, within PGA1_c16370 at 1698.556 kb on - strand, within PGA1_c16370 at 1698.683 kb on - strand, within PGA1_c16370 at 1698.725 kb on + strand, within PGA1_c16370 at 1698.735 kb on - strand, within PGA1_c16370 at 1698.845 kb on + strand at 1698.850 kb on + strand at 1698.981 kb on + strand at 1698.989 kb on - strand, within PGA1_c16380 at 1699.016 kb on - strand, within PGA1_c16380 at 1699.023 kb on - strand, within PGA1_c16380 at 1699.072 kb on - strand, within PGA1_c16380 at 1699.074 kb on - strand, within PGA1_c16380 at 1699.118 kb on - strand, within PGA1_c16380 at 1699.234 kb on + strand, within PGA1_c16380 at 1699.238 kb on + strand, within PGA1_c16380 at 1699.283 kb on + strand, within PGA1_c16380 at 1699.309 kb on + strand, within PGA1_c16380 at 1699.388 kb on + strand, within PGA1_c16380 at 1699.388 kb on + strand, within PGA1_c16380 at 1699.437 kb on - strand, within PGA1_c16380 at 1699.450 kb on - strand, within PGA1_c16380 at 1699.460 kb on + strand, within PGA1_c16380 at 1699.502 kb on - strand, within PGA1_c16380 at 1699.525 kb on - strand, within PGA1_c16380 at 1699.666 kb on - strand, within PGA1_c16380 at 1699.829 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 1,697,231 + PGA1_c16350 0.68 -1.8 1,697,344 - -0.9 1,697,415 + +0.0 1,697,423 - -3.2 1,697,423 - -0.7 1,697,423 - -0.1 1,697,423 - -0.1 1,697,426 + -1.1 1,697,594 + PGA1_c16360 0.37 -0.4 1,697,604 + PGA1_c16360 0.39 +0.6 1,697,605 + PGA1_c16360 0.39 -0.3 1,697,697 - PGA1_c16360 0.60 -1.4 1,697,764 - PGA1_c16360 0.76 -0.1 1,697,787 + PGA1_c16360 0.81 -0.0 1,697,950 - -1.4 1,697,959 + -1.0 1,697,967 - +0.5 1,697,977 + +0.2 1,698,029 + -1.0 1,698,103 - PGA1_c16370 0.15 +1.0 1,698,157 + PGA1_c16370 0.21 -0.7 1,698,165 - PGA1_c16370 0.21 +0.4 1,698,373 + PGA1_c16370 0.44 +0.3 1,698,406 - PGA1_c16370 0.47 -0.9 1,698,526 + PGA1_c16370 0.60 -2.2 1,698,532 - PGA1_c16370 0.61 -0.0 1,698,556 - PGA1_c16370 0.63 -0.2 1,698,556 - PGA1_c16370 0.63 +0.5 1,698,683 - PGA1_c16370 0.77 -0.6 1,698,725 + PGA1_c16370 0.81 +0.9 1,698,735 - PGA1_c16370 0.83 +0.4 1,698,845 + -0.3 1,698,850 + +0.2 1,698,981 + +0.3 1,698,989 - PGA1_c16380 0.10 +1.0 1,699,016 - PGA1_c16380 0.13 +0.2 1,699,023 - PGA1_c16380 0.14 +0.1 1,699,072 - PGA1_c16380 0.19 +0.5 1,699,074 - PGA1_c16380 0.19 -0.4 1,699,118 - PGA1_c16380 0.24 -0.4 1,699,234 + PGA1_c16380 0.37 +0.8 1,699,238 + PGA1_c16380 0.37 -0.4 1,699,283 + PGA1_c16380 0.42 +0.1 1,699,309 + PGA1_c16380 0.45 -0.4 1,699,388 + PGA1_c16380 0.53 -0.0 1,699,388 + PGA1_c16380 0.53 +0.2 1,699,437 - PGA1_c16380 0.58 -1.2 1,699,450 - PGA1_c16380 0.60 +0.2 1,699,460 + PGA1_c16380 0.61 -1.3 1,699,502 - PGA1_c16380 0.65 -0.1 1,699,525 - PGA1_c16380 0.68 +0.5 1,699,666 - PGA1_c16380 0.83 -0.7 1,699,829 + +1.3
Or see this region's nucleotide sequence