Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25265 and BWI76_RS25270 are separated by 22 nucleotides BWI76_RS25270 and BWI76_RS25275 are separated by 65 nucleotides BWI76_RS25275 and BWI76_RS25280 are separated by 45 nucleotides
BWI76_RS25265: BWI76_RS25265 - RNA polymerase factor sigma-54, at 5,251,847 to 5,253,280
_RS25265
BWI76_RS25270: BWI76_RS25270 - ribosome hibernation promoting factor, at 5,253,303 to 5,253,590
_RS25270
BWI76_RS25275: BWI76_RS25275 - PTS IIA-like nitrogen regulatory protein PtsN, at 5,253,656 to 5,254,144
_RS25275
BWI76_RS25280: BWI76_RS25280 - RNase adaptor protein RapZ, at 5,254,190 to 5,255,044
_RS25280
Position (kb) 5253
5254 Strain fitness (log2 ratio) -1
0
1 at 5253.303 kb on + strand at 5253.477 kb on + strand, within BWI76_RS25270 at 5253.483 kb on + strand, within BWI76_RS25270 at 5253.502 kb on + strand, within BWI76_RS25270 at 5254.184 kb on + strand at 5254.201 kb on - strand at 5254.555 kb on + strand, within BWI76_RS25280
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM remove 5,253,303 + -1.3 5,253,477 + BWI76_RS25270 0.60 +0.1 5,253,483 + BWI76_RS25270 0.62 +1.4 5,253,502 + BWI76_RS25270 0.69 -0.1 5,254,184 + -0.7 5,254,201 - -0.9 5,254,555 + BWI76_RS25280 0.43 -0.5
Or see this region's nucleotide sequence