Experiment: SBM - no RNA protect
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4367 and SO4368 overlap by 17 nucleotides SO4368 and SO4369 are separated by 9 nucleotides SO4369 and SO4370 overlap by 1 nucleotides SO4370 and SO4371 overlap by 4 nucleotides
SO4367: SO4367 - acyltransferase family protein (NCBI ptt file), at 4,562,493 to 4,563,344
SO4367
SO4368: SO4368 - acyl carrier protein, putative (NCBI ptt file), at 4,563,328 to 4,563,582
SO4368
SO4369: SO4369 - acyl carrier protein, putative (NCBI ptt file), at 4,563,592 to 4,563,840
SO4369
SO4370: SO4370 - membrane protein, putative (NCBI ptt file), at 4,563,840 to 4,564,388
SO4370
SO4371: SO4371 - conserved hypothetical protein (NCBI ptt file), at 4,564,385 to 4,565,749
SO4371
Position (kb) 4563
4564
4565 Strain fitness (log2 ratio) -1
0
1
2 at 4562.843 kb on - strand, within SO4367 at 4562.926 kb on + strand, within SO4367 at 4562.926 kb on + strand, within SO4367 at 4562.928 kb on + strand, within SO4367 at 4562.934 kb on - strand, within SO4367 at 4562.936 kb on - strand, within SO4367 at 4562.936 kb on - strand, within SO4367 at 4562.986 kb on + strand, within SO4367 at 4563.002 kb on - strand, within SO4367 at 4563.183 kb on + strand, within SO4367 at 4563.228 kb on + strand, within SO4367 at 4563.246 kb on + strand, within SO4367 at 4563.451 kb on - strand, within SO4368 at 4563.513 kb on + strand, within SO4368 at 4563.518 kb on + strand, within SO4368 at 4563.537 kb on - strand, within SO4368 at 4563.575 kb on + strand at 4563.575 kb on + strand at 4563.583 kb on - strand at 4563.588 kb on - strand at 4563.592 kb on + strand at 4563.677 kb on + strand, within SO4369 at 4563.692 kb on - strand, within SO4369 at 4563.710 kb on + strand, within SO4369 at 4563.710 kb on + strand, within SO4369 at 4563.710 kb on + strand, within SO4369 at 4563.718 kb on - strand, within SO4369 at 4563.718 kb on - strand, within SO4369 at 4563.817 kb on + strand at 4563.817 kb on + strand at 4563.835 kb on + strand at 4563.858 kb on - strand at 4563.950 kb on - strand, within SO4370 at 4564.078 kb on + strand, within SO4370 at 4564.086 kb on - strand, within SO4370 at 4564.086 kb on - strand, within SO4370 at 4564.102 kb on + strand, within SO4370 at 4564.110 kb on - strand, within SO4370 at 4564.198 kb on - strand, within SO4370 at 4564.328 kb on - strand, within SO4370 at 4564.412 kb on + strand at 4564.451 kb on - strand at 4564.451 kb on - strand at 4564.451 kb on - strand at 4564.564 kb on + strand, within SO4371 at 4564.581 kb on + strand, within SO4371 at 4564.704 kb on + strand, within SO4371 at 4564.712 kb on - strand, within SO4371 at 4564.712 kb on - strand, within SO4371 at 4564.724 kb on + strand, within SO4371 at 4564.790 kb on - strand, within SO4371 at 4564.807 kb on + strand, within SO4371 at 4564.880 kb on + strand, within SO4371 at 4564.888 kb on - strand, within SO4371 at 4565.007 kb on - strand, within SO4371 at 4565.289 kb on - strand, within SO4371 at 4565.328 kb on - strand, within SO4371
Per-strain Table
Position Strand Gene LocusTag Fraction SBM - no RNA protect remove 4,562,843 - SO4367 0.41 +1.0 4,562,926 + SO4367 0.51 +1.1 4,562,926 + SO4367 0.51 +1.1 4,562,928 + SO4367 0.51 +0.8 4,562,934 - SO4367 0.52 +0.1 4,562,936 - SO4367 0.52 +1.3 4,562,936 - SO4367 0.52 -0.8 4,562,986 + SO4367 0.58 -0.0 4,563,002 - SO4367 0.60 -0.0 4,563,183 + SO4367 0.81 +0.6 4,563,228 + SO4367 0.86 +1.4 4,563,246 + SO4367 0.88 -0.2 4,563,451 - SO4368 0.48 +1.4 4,563,513 + SO4368 0.73 +1.4 4,563,518 + SO4368 0.75 +0.5 4,563,537 - SO4368 0.82 +1.3 4,563,575 + +0.3 4,563,575 + +0.5 4,563,583 - +0.5 4,563,588 - +0.1 4,563,592 + +1.5 4,563,677 + SO4369 0.34 -0.3 4,563,692 - SO4369 0.40 +0.6 4,563,710 + SO4369 0.47 +1.1 4,563,710 + SO4369 0.47 -1.3 4,563,710 + SO4369 0.47 +0.5 4,563,718 - SO4369 0.51 +0.5 4,563,718 - SO4369 0.51 +0.9 4,563,817 + +0.3 4,563,817 + +0.3 4,563,835 + -0.3 4,563,858 - +0.4 4,563,950 - SO4370 0.20 +2.4 4,564,078 + SO4370 0.43 +0.3 4,564,086 - SO4370 0.45 +0.1 4,564,086 - SO4370 0.45 +0.3 4,564,102 + SO4370 0.48 -1.0 4,564,110 - SO4370 0.49 +0.3 4,564,198 - SO4370 0.65 +0.6 4,564,328 - SO4370 0.89 +0.4 4,564,412 + +1.1 4,564,451 - -0.9 4,564,451 - -0.3 4,564,451 - -0.1 4,564,564 + SO4371 0.13 +0.5 4,564,581 + SO4371 0.14 -0.3 4,564,704 + SO4371 0.23 +0.3 4,564,712 - SO4371 0.24 -0.7 4,564,712 - SO4371 0.24 +0.6 4,564,724 + SO4371 0.25 +0.6 4,564,790 - SO4371 0.30 +0.8 4,564,807 + SO4371 0.31 -0.1 4,564,880 + SO4371 0.36 +1.0 4,564,888 - SO4371 0.37 -0.7 4,565,007 - SO4371 0.46 +0.3 4,565,289 - SO4371 0.66 +0.4 4,565,328 - SO4371 0.69 +0.8
Or see this region's nucleotide sequence