Strain Fitness in Shewanella oneidensis MR-1 around SO3303

Experiment: SBM - no RNA protect

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SBM - no RNA protect
3,450,996	+		SO3302	0.76	-1.5
3,451,055	-		SO3302	0.78	+1.7
3,451,064	+		SO3302	0.78	-1.2
3,451,160	+		SO3302	0.80	+0.4
3,451,215	+		SO3302	0.82	+0.9
3,451,250	+		SO3302	0.83	+0.2
3,451,250	+		SO3302	0.83	+0.6
3,451,328	+		SO3302	0.85	-1.1
3,451,383	+		SO3302	0.86	-0.0
3,451,390	+		SO3302	0.86	-0.9
3,451,456	-		SO3302	0.88	+1.5
3,451,475	-		SO3302	0.88	-0.9
3,451,490	+		SO3302	0.89	-0.1
3,451,490	+		SO3302	0.89	-0.4
3,451,490	+		SO3302	0.89	+0.6
3,451,490	+		SO3302	0.89	+0.4
3,451,490	+		SO3302	0.89	-0.2
3,451,490	+		SO3302	0.89	+0.5
3,451,490	+		SO3302	0.89	-0.2
3,451,490	+		SO3302	0.89	+0.2
3,451,490	+		SO3302	0.89	-0.1
3,451,490	+		SO3302	0.89	+1.7
3,451,490	+		SO3302	0.89	-0.4
3,451,498	-		SO3302	0.89	+0.4
3,451,498	-		SO3302	0.89	-0.9
3,451,498	-		SO3302	0.89	+0.5
3,451,498	-		SO3302	0.89	-0.2
3,451,498	-		SO3302	0.89	-0.8
3,451,498	-		SO3302	0.89	+1.3
3,451,498	-		SO3302	0.89	-0.6
3,451,498	-		SO3302	0.89	+0.3
3,451,498	-		SO3302	0.89	+0.1
3,451,498	-		SO3302	0.89	-0.6
3,451,503	+		SO3302	0.89	+0.3
3,451,505	+		SO3302	0.89	+0.2
3,451,505	+		SO3302	0.89	-1.5
3,451,525	+		SO3302	0.90	-0.2
3,451,588	-				-0.2
3,451,607	+				-1.7
3,451,615	-				-0.2
3,451,626	+				+1.0
3,451,634	-				+0.8
3,451,679	+				+0.7
3,451,694	+				+0.5
3,451,694	+				+0.5
3,451,697	-				+0.7
3,451,697	-				+0.5
3,451,697	-				+0.8
3,451,702	-				+0.6
3,451,702	-				+0.6
3,451,702	-				+0.1
3,451,702	-				+0.0
3,451,725	+				+2.7
3,451,769	+				-0.6
3,451,774	+				+0.3
3,451,777	-				+0.5
3,451,788	+				-0.2
3,451,788	+				-0.9
3,451,788	+				-1.5
3,451,788	+				+1.2
3,451,788	+				-0.5
3,451,788	+				+0.9
3,451,788	+				+0.6
3,451,788	+				-0.3
3,451,788	+				+0.5
3,451,788	+				+0.1
3,451,788	+				-0.1
3,451,788	+				+0.4
3,451,788	+				-0.5
3,451,788	+				+0.5
3,451,788	+				-0.3
3,451,788	+				-0.2
3,451,788	+				+0.8
3,451,788	+				-0.3
3,451,788	+				+0.7
3,451,788	+				+0.3
3,451,788	+				+0.9
3,451,788	+				+0.7
3,451,788	+				+0.1
3,451,788	+				-0.5
3,451,788	+				+0.8
3,451,788	+				-0.6
3,451,788	+				+1.7
3,451,788	+				-1.3
3,451,788	+				+0.3
3,451,788	+				+0.9
3,451,788	+				-0.3
3,451,788	+				+0.6
3,451,788	+				+1.2
3,451,788	+				-0.7
3,451,788	+				-0.2
3,451,788	+				-0.8
3,451,789	-				-0.4
3,451,796	-				-1.3
3,451,796	-				-0.2
3,451,796	-				+0.1
3,451,796	-				-0.4
3,451,796	-				-0.4
3,451,796	-				+0.3
3,451,796	-				+0.6
3,451,796	-				+0.4
3,451,796	-				+0.7
3,451,796	-				-0.4
3,451,796	-				+0.5
3,451,796	-				+1.3
3,451,796	-				-1.2
3,451,796	-				+0.3
3,451,796	-				+0.1
3,451,796	-				+0.6
3,451,796	-				+0.3
3,451,796	-				+0.6
3,451,796	-				-0.3
3,451,796	-				-0.3
3,451,796	-				+0.5
3,451,796	-				-0.9
3,451,796	-				+0.1
3,451,796	-				+0.5
3,451,796	-				-0.0
3,451,796	-				+0.4
3,451,796	-				+1.1
3,451,796	-				+0.2
3,451,796	-				-1.1
3,451,796	-				-0.1
3,451,808	-				+1.9
3,451,832	-				+0.0
3,451,838	+				+0.9
3,451,865	+				-1.7
3,451,873	-				+0.8
3,451,885	+				-1.8
3,451,885	+				-1.9
3,451,885	+				+0.1
3,451,893	-				+0.3
3,451,893	-				-0.1
3,451,893	-				-0.0
3,451,894	-				-0.1
3,451,927	-				+0.3
3,451,939	+				+0.5
3,451,947	-				-0.4
3,451,979	-				+1.0
3,451,992	-				-0.9
3,452,002	-				+3.1
3,452,022	-				-0.4
3,452,026	+				+3.1
3,452,029	-				-0.2
3,452,036	+				+0.8
3,452,121	+				-1.2
3,452,162	-				+1.0
3,452,172	-				+0.1
3,452,189	+		SO3303	0.11	-0.3
3,452,189	+		SO3303	0.11	+0.0
3,452,189	+		SO3303	0.11	+0.5
3,452,189	+		SO3303	0.11	-0.1
3,452,197	-		SO3303	0.11	-0.2
3,452,280	+		SO3303	0.14	+2.2
3,452,281	+		SO3303	0.14	-2.4
3,452,281	+		SO3303	0.14	+0.2
3,452,326	-		SO3303	0.16	+0.2
3,452,337	+		SO3303	0.17	-0.1
3,452,357	-		SO3303	0.18	+0.5
3,452,441	+		SO3303	0.21	+0.3
3,452,447	+		SO3303	0.21	+0.4
3,452,455	-		SO3303	0.22	-1.2
3,452,455	-		SO3303	0.22	-0.3
3,452,455	-		SO3303	0.22	-0.3
3,452,522	+		SO3303	0.24	+0.6
3,452,537	+		SO3303	0.25	+0.1
3,452,547	+		SO3303	0.25	-1.0
3,452,561	+		SO3303	0.26	+1.2
3,452,561	+		SO3303	0.26	+0.7
3,452,561	+		SO3303	0.26	-0.1
3,452,561	+		SO3303	0.26	-0.3
3,452,561	+		SO3303	0.26	+0.0
3,452,561	+		SO3303	0.26	+0.8
3,452,561	+		SO3303	0.26	+0.6
3,452,569	-		SO3303	0.26	-0.6
3,452,569	-		SO3303	0.26	+1.6
3,452,569	-		SO3303	0.26	-0.3
3,452,569	-		SO3303	0.26	+0.1
3,452,578	-		SO3303	0.27	+0.7
3,452,580	-		SO3303	0.27	-0.3
3,452,607	+		SO3303	0.28	-0.1
3,452,614	-		SO3303	0.28	+0.3
3,452,625	+		SO3303	0.28	+0.2
3,452,631	+		SO3303	0.29	-0.5
3,452,653	+		SO3303	0.30	-0.8
3,452,653	+		SO3303	0.30	-0.1
3,452,653	+		SO3303	0.30	+1.1
3,452,653	+		SO3303	0.30	+1.2
3,452,661	-		SO3303	0.30	+0.8
3,452,661	-		SO3303	0.30	+0.3
3,452,661	-		SO3303	0.30	+0.2
3,452,661	-		SO3303	0.30	+0.4
3,452,663	+		SO3303	0.30	+0.1
3,452,663	+		SO3303	0.30	+1.8
3,452,671	-		SO3303	0.30	+0.9
3,452,671	-		SO3303	0.30	-0.3
3,452,712	+		SO3303	0.32	+0.5
3,452,712	+		SO3303	0.32	-0.9
3,452,720	+		SO3303	0.32	-0.1
3,452,720	-		SO3303	0.32	+0.4
3,452,755	-		SO3303	0.34	+0.4
3,452,892	+		SO3303	0.39	-0.5
3,452,900	+		SO3303	0.40	+1.1
3,452,900	+		SO3303	0.40	-2.3
3,452,901	+		SO3303	0.40	+0.2
3,452,901	+		SO3303	0.40	+1.2
3,452,908	-		SO3303	0.40	+0.6
3,452,909	-		SO3303	0.40	+1.3
3,452,909	-		SO3303	0.40	+0.2
3,452,914	-		SO3303	0.40	+0.1
3,452,916	+		SO3303	0.40	+0.5
3,452,926	+		SO3303	0.41	+0.2
3,452,926	+		SO3303	0.41	-1.6
3,452,926	+		SO3303	0.41	-1.4
3,452,926	+		SO3303	0.41	+0.2
3,452,926	+		SO3303	0.41	-0.2
3,452,926	+		SO3303	0.41	+1.1
3,452,926	+		SO3303	0.41	+0.0
3,452,934	-		SO3303	0.41	-0.5
3,452,934	-		SO3303	0.41	+0.0
3,452,934	-		SO3303	0.41	+0.4
3,452,949	+		SO3303	0.42	-0.8
3,452,949	+		SO3303	0.42	-0.1
3,452,949	+		SO3303	0.42	-0.1
3,452,949	+		SO3303	0.42	+0.5
3,452,949	+		SO3303	0.42	-0.0
3,452,949	-		SO3303	0.42	-0.4
3,452,949	-		SO3303	0.42	-0.9
3,452,949	-		SO3303	0.42	-0.7
3,452,954	-		SO3303	0.42	+0.8
3,452,957	-		SO3303	0.42	+0.4
3,452,957	-		SO3303	0.42	+0.3
3,452,957	-		SO3303	0.42	+0.4
3,452,957	-		SO3303	0.42	+0.2
3,452,990	-		SO3303	0.43	-1.7
3,453,057	-		SO3303	0.46	+0.6
3,453,066	-		SO3303	0.47	-1.1
3,453,084	-		SO3303	0.47	-0.7
3,453,123	+		SO3303	0.49	+0.1
3,453,131	+		SO3303	0.49	-0.0
3,453,160	+		SO3303	0.50	+0.7
3,453,161	+		SO3303	0.50	+0.9
3,453,174	+		SO3303	0.51	+0.5
3,453,182	+		SO3303	0.51	-0.2
3,453,185	+		SO3303	0.51	-0.1
3,453,198	-		SO3303	0.52	-1.1
3,453,208	-		SO3303	0.52	+0.0
3,453,219	+		SO3303	0.53	+0.7
3,453,219	+		SO3303	0.53	-2.3
3,453,219	+		SO3303	0.53	+1.5
3,453,219	+		SO3303	0.53	+0.9
3,453,224	+		SO3303	0.53	+1.1
3,453,242	-		SO3303	0.54	-0.0
3,453,266	+		SO3303	0.55	+2.1
3,453,288	-		SO3303	0.56	-0.3
3,453,294	+		SO3303	0.56	+1.3
3,453,297	-		SO3303	0.56	-0.9
3,453,297	-		SO3303	0.56	+1.5
3,453,297	-		SO3303	0.56	-0.1
3,453,311	-		SO3303	0.57	-0.8
3,453,326	-		SO3303	0.57	-0.6
3,453,406	+		SO3303	0.60	-0.1
3,453,413	+		SO3303	0.61	+0.6
3,453,413	+		SO3303	0.61	+0.3
3,453,413	+		SO3303	0.61	-0.1
3,453,413	+		SO3303	0.61	+1.8
3,453,413	+		SO3303	0.61	-0.0
3,453,413	+		SO3303	0.61	-0.5
3,453,413	+		SO3303	0.61	-0.4
3,453,413	+		SO3303	0.61	+0.6
3,453,413	+		SO3303	0.61	-0.3
3,453,413	+		SO3303	0.61	+0.9
3,453,414	+		SO3303	0.61	+0.8
3,453,414	+		SO3303	0.61	-0.6
3,453,421	-		SO3303	0.61	+1.9
3,453,421	-		SO3303	0.61	+0.3
3,453,421	-		SO3303	0.61	+0.3
3,453,421	-		SO3303	0.61	-0.5
3,453,421	-		SO3303	0.61	+0.6
3,453,421	-		SO3303	0.61	+0.5
3,453,421	-		SO3303	0.61	-0.5
3,453,421	-		SO3303	0.61	+0.7
3,453,422	-		SO3303	0.61	+0.3
3,453,422	-		SO3303	0.61	+0.4
3,453,437	+		SO3303	0.62	-0.4
3,453,437	+		SO3303	0.62	-0.1
3,453,535	+		SO3303	0.66	+0.1
3,453,559	+		SO3303	0.67	+1.6
3,453,567	-		SO3303	0.67	-0.5
3,453,567	-		SO3303	0.67	+1.1
3,453,567	-		SO3303	0.67	+2.8
3,453,567	-		SO3303	0.67	+0.5
3,453,592	-		SO3303	0.68	-3.8
3,453,665	-		SO3303	0.71	+0.2
3,453,688	+		SO3303	0.72	-0.8
3,453,735	+		SO3303	0.74	+0.4
3,453,741	+		SO3303	0.74	+0.0
3,453,741	+		SO3303	0.74	+1.7
3,453,748	-		SO3303	0.74	+0.9
3,453,749	-		SO3303	0.74	+2.5
3,453,749	-		SO3303	0.74	-1.1
3,453,756	-		SO3303	0.75	+0.4
3,453,774	-		SO3303	0.75	-1.9
3,453,810	-		SO3303	0.77	-0.4
3,453,811	-		SO3303	0.77	+0.8
3,453,821	-		SO3303	0.77	+0.5
3,453,826	+		SO3303	0.78	-1.2
3,453,826	+		SO3303	0.78	+0.2
3,453,828	-		SO3303	0.78	+0.9
3,453,834	+		SO3303	0.78	+0.5
3,453,834	+		SO3303	0.78	-0.5
3,453,834	+		SO3303	0.78	+1.0
3,453,838	+		SO3303	0.78	+0.7
3,453,838	+		SO3303	0.78	+0.3
3,453,842	-		SO3303	0.78	+0.2
3,453,842	-		SO3303	0.78	+0.4
3,453,842	-		SO3303	0.78	+0.5
3,453,844	+		SO3303	0.78	+0.1
3,453,844	+		SO3303	0.78	+1.7
3,453,844	+		SO3303	0.78	+0.6
3,453,849	+		SO3303	0.79	+0.8
3,453,852	-		SO3303	0.79	+1.1
3,453,852	-		SO3303	0.79	-0.3
3,453,852	-		SO3303	0.79	+0.1
3,453,853	-		SO3303	0.79	-1.3
3,453,857	-		SO3303	0.79	+0.2
3,453,914	+		SO3303	0.81	+0.4
3,453,928	-		SO3303	0.82	+0.9
3,454,003	+		SO3303	0.85	+1.3
3,454,011	-		SO3303	0.85	+1.1
3,454,022	-		SO3303	0.86	+0.2
3,454,043	-		SO3303	0.86	+0.0
3,454,049	+		SO3303	0.87	-0.3
3,454,049	+		SO3303	0.87	+0.0
3,454,072	-		SO3303	0.88	-0.6
3,454,081	+		SO3303	0.88	+0.5
3,454,087	+		SO3303	0.88	-0.2
3,454,094	-		SO3303	0.89	+1.6
3,454,095	-		SO3303	0.89	+0.0
3,454,104	+		SO3303	0.89	+0.7
3,454,109	+		SO3303	0.89	-0.1
3,454,217	-				+0.4
3,454,252	+				+0.4
3,454,262	+				+0.2
3,454,275	-				+1.2
3,454,278	+				+0.4
3,454,285	+				+0.2
3,454,285	-				+0.0
3,454,285	-				+0.2
3,454,291	+				-0.5
3,454,291	+				+0.7
3,454,291	-				+1.5
3,454,291	-				+0.7
3,454,299	-				-2.1
3,454,299	-				+0.0
3,454,312	+				-0.2
3,454,313	-				-0.2
3,454,317	+				+0.4
3,454,324	+				+0.9
3,454,332	-				+0.3
3,454,334	+				-0.6
3,454,346	+				+0.9
3,454,385	+				-0.1
3,454,385	+				+2.5
3,454,385	+				+1.2
3,454,385	+				-0.9
3,454,393	-				+0.4
3,454,407	+				+0.2
3,454,415	-				+0.6
3,454,425	+				+1.1
3,454,436	+				+1.0
3,454,440	-				-0.3
3,454,441	+				-0.4
3,454,441	+				+0.2
3,454,441	+				+0.1
3,454,449	-				+2.0
3,454,449	-				+0.3
3,454,449	-				-0.5
3,454,451	+				-0.6
3,454,465	+				-0.6
3,454,483	-				+0.2
3,454,490	+				+2.5
3,454,494	+				+0.6
3,454,494	+				+0.6
3,454,494	+				+0.9
3,454,494	+				-0.6
3,454,494	+				-0.2
3,454,502	-				+1.1
3,454,502	-				+0.1
3,454,502	-				+0.3
3,454,502	-				+0.7
3,454,502	-				-0.9
3,454,583	+				+0.5
3,454,583	+				+0.6
3,454,586	+				+0.7
3,454,586	+				-0.5
3,454,586	+				+0.1
3,454,589	-				+0.4
3,454,640	+		SO3305	0.11	-0.0
3,454,640	+		SO3305	0.11	-0.2
3,454,640	+		SO3305	0.11	+0.0
3,454,640	+		SO3305	0.11	+0.3
3,454,648	-		SO3305	0.12	+0.1
3,454,648	-		SO3305	0.12	-0.8
3,454,648	-		SO3305	0.12	+0.9
3,454,648	-		SO3305	0.12	-0.0
3,454,648	-		SO3305	0.12	-0.7
3,454,669	+		SO3305	0.16	+0.2
3,454,669	+		SO3305	0.16	+1.1
3,454,677	-		SO3305	0.17	+0.5
3,454,677	-		SO3305	0.17	+0.9
3,454,683	+		SO3305	0.18	-0.6
3,454,683	+		SO3305	0.18	+0.5
3,454,683	+		SO3305	0.18	-0.9
3,454,684	+		SO3305	0.18	+0.1
3,454,691	-		SO3305	0.19	-0.7
3,454,691	-		SO3305	0.19	-2.1
3,454,691	-		SO3305	0.19	+0.1
3,454,718	+		SO3305	0.24	+0.3
3,454,725	+		SO3305	0.25	+0.2
3,454,725	+		SO3305	0.25	-0.0
3,454,726	-		SO3305	0.25	-0.0
3,454,726	-		SO3305	0.25	+0.9
3,454,730	+		SO3305	0.26	-0.1
3,454,735	+		SO3305	0.26	-0.2
3,454,735	+		SO3305	0.26	-0.2
3,454,735	+		SO3305	0.26	-0.5
3,454,735	+		SO3305	0.26	+0.4
3,454,735	+		SO3305	0.26	+0.2
3,454,735	+		SO3305	0.26	-0.6
3,454,738	-		SO3305	0.27	+0.5
3,454,738	-		SO3305	0.27	-0.2
3,454,738	-		SO3305	0.27	+0.2
3,454,743	-		SO3305	0.28	+3.1
3,454,743	-		SO3305	0.28	+0.6
3,454,743	-		SO3305	0.28	-0.5
3,454,743	-		SO3305	0.28	+0.2
3,454,743	-		SO3305	0.28	-1.6
3,454,743	-		SO3305	0.28	-0.0
3,454,765	+		SO3305	0.31	+0.3
3,454,785	-		SO3305	0.34	+0.0
3,454,817	+		SO3305	0.40	+0.9
3,454,826	+		SO3305	0.41	+0.7
3,454,826	+		SO3305	0.41	-0.4
3,454,826	+		SO3305	0.41	-0.2
3,454,826	+		SO3305	0.41	-1.3
3,454,834	-		SO3305	0.42	-0.5
3,454,834	-		SO3305	0.42	+0.1
3,454,834	-		SO3305	0.42	-0.2
3,454,834	-		SO3305	0.42	+0.3
3,454,879	+		SO3305	0.50	-0.0
3,454,884	+		SO3305	0.50	+0.6
3,454,891	+		SO3305	0.52	-0.2
3,454,892	-		SO3305	0.52	+0.4
3,454,899	-		SO3305	0.53	-0.3
3,454,924	+		SO3305	0.57	+0.4
3,454,929	+		SO3305	0.58	-0.3
3,454,934	+		SO3305	0.58	+0.7
3,454,934	+		SO3305	0.58	+1.7
3,454,934	+		SO3305	0.58	+0.1
3,454,934	+		SO3305	0.58	-0.0
3,454,934	+		SO3305	0.58	+1.5
3,454,934	+		SO3305	0.58	-0.4
3,454,939	+		SO3305	0.59	+1.0
3,454,942	-		SO3305	0.60	+0.1
3,454,942	-		SO3305	0.60	+0.8
3,454,942	-		SO3305	0.60	+0.3
3,454,942	-		SO3305	0.60	-0.1
3,454,942	-		SO3305	0.60	+1.8
3,454,942	-		SO3305	0.60	+0.4
3,454,942	-		SO3305	0.60	+0.6
3,454,942	-		SO3305	0.60	+0.5
3,454,942	-		SO3305	0.60	+1.3
3,454,954	-		SO3305	0.62	-0.4
3,454,954	-		SO3305	0.62	+1.0
3,454,981	+		SO3305	0.66	+0.6
3,454,982	-		SO3305	0.66	+0.3
3,454,984	+		SO3305	0.67	+0.5
3,454,986	+		SO3305	0.67	+0.3
3,454,992	-		SO3305	0.68	+1.0
3,455,004	+		SO3305	0.70	+1.1
3,455,009	+		SO3305	0.71	+1.3
3,455,009	+		SO3305	0.71	+0.9
3,455,009	+		SO3305	0.71	-0.4
3,455,017	-		SO3305	0.72	-0.7
3,455,050	+		SO3305	0.77	-1.1
3,455,050	+		SO3305	0.77	-0.2
3,455,058	-		SO3305	0.78	-0.2
3,455,058	-		SO3305	0.78	+1.1
3,455,058	-		SO3305	0.78	-2.3
3,455,095	+		SO3305	0.84	-0.3
3,455,095	+		SO3305	0.84	-0.2
3,455,095	+		SO3305	0.84	+0.1
3,455,124	+		SO3305	0.89	-1.3
3,455,129	+		SO3305	0.90	+0.2
3,455,144	+				+1.2
3,455,144	+				-0.5
3,455,144	+				+0.1
3,455,159	-				-0.0
3,455,201	+				-1.3
3,455,201	+				+0.5
3,455,209	-				+0.2
3,455,211	+				+0.4
3,455,219	+				+0.2
3,455,219	-				+0.2
3,455,227	-				-0.5
3,455,363	-				-0.7
3,455,369	+				+0.0
3,455,369	+				+0.7