Experiment: SBM - no RNA protect
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0922 and SO0923 are separated by 84 nucleotides SO0923 and SO0924 are separated by 70 nucleotides SO0924 and SO0925 are separated by 15 nucleotides SO0925 and SO0926 are separated by 81 nucleotides SO0926 and SO0927 are separated by 187 nucleotides
SO0922: SO0922 - proton/glutamate symporter (NCBI ptt file), at 951,910 to 953,184
SO0922
SO0923: SO0923 - conserved hypothetical protein (NCBI ptt file), at 953,269 to 953,685
SO0923
SO0924: SO0924 - hypothetical protein (NCBI ptt file), at 953,756 to 953,989
SO0924
SO0925: SO0925 - GGDEF domain protein (NCBI ptt file), at 954,005 to 955,012
SO0925
SO0926: SO0926 - acetyltransferase, GNAT family (NCBI ptt file), at 955,094 to 955,708
SO0926
SO0927: SO0927 - hypothetical protein (NCBI ptt file), at 955,896 to 956,237
SO0927
Position (kb) 954
955
956 Strain fitness (log2 ratio) -2
-1
0
1
2 at 953.114 kb on - strand at 953.129 kb on + strand at 953.166 kb on - strand at 953.178 kb on + strand at 953.339 kb on + strand, within SO0923 at 953.366 kb on - strand, within SO0923 at 953.366 kb on - strand, within SO0923 at 953.391 kb on + strand, within SO0923 at 953.503 kb on + strand, within SO0923 at 953.527 kb on + strand, within SO0923 at 953.542 kb on + strand, within SO0923 at 953.560 kb on + strand, within SO0923 at 953.560 kb on + strand, within SO0923 at 953.568 kb on - strand, within SO0923 at 953.568 kb on - strand, within SO0923 at 953.568 kb on - strand, within SO0923 at 953.568 kb on - strand, within SO0923 at 953.568 kb on - strand, within SO0923 at 953.568 kb on - strand, within SO0923 at 953.608 kb on - strand, within SO0923 at 953.611 kb on - strand, within SO0923 at 953.634 kb on - strand, within SO0923 at 953.652 kb on + strand at 953.720 kb on + strand at 953.805 kb on + strand, within SO0924 at 953.862 kb on + strand, within SO0924 at 953.862 kb on + strand, within SO0924 at 953.911 kb on - strand, within SO0924 at 953.915 kb on + strand, within SO0924 at 953.915 kb on + strand, within SO0924 at 953.964 kb on + strand, within SO0924 at 953.984 kb on + strand at 954.003 kb on + strand at 954.013 kb on - strand at 954.077 kb on + strand at 954.080 kb on - strand at 954.124 kb on + strand, within SO0925 at 954.269 kb on + strand, within SO0925 at 954.277 kb on + strand, within SO0925 at 954.277 kb on + strand, within SO0925 at 954.277 kb on - strand, within SO0925 at 954.318 kb on + strand, within SO0925 at 954.367 kb on + strand, within SO0925 at 954.367 kb on + strand, within SO0925 at 954.369 kb on + strand, within SO0925 at 954.375 kb on - strand, within SO0925 at 954.375 kb on - strand, within SO0925 at 954.385 kb on - strand, within SO0925 at 954.451 kb on + strand, within SO0925 at 954.459 kb on - strand, within SO0925 at 954.459 kb on - strand, within SO0925 at 954.527 kb on - strand, within SO0925 at 954.544 kb on + strand, within SO0925 at 954.579 kb on + strand, within SO0925 at 954.579 kb on + strand, within SO0925 at 954.586 kb on + strand, within SO0925 at 954.588 kb on - strand, within SO0925 at 954.607 kb on - strand, within SO0925 at 954.686 kb on + strand, within SO0925 at 954.686 kb on + strand, within SO0925 at 954.753 kb on + strand, within SO0925 at 954.761 kb on - strand, within SO0925 at 954.769 kb on + strand, within SO0925 at 954.890 kb on + strand, within SO0925 at 954.944 kb on + strand at 954.956 kb on - strand at 954.961 kb on + strand at 954.962 kb on - strand at 954.974 kb on - strand at 954.983 kb on + strand at 954.999 kb on - strand at 955.021 kb on + strand at 955.022 kb on + strand at 955.038 kb on - strand at 955.126 kb on + strand at 955.126 kb on + strand at 955.134 kb on - strand at 955.149 kb on + strand at 955.212 kb on + strand, within SO0926 at 955.215 kb on - strand, within SO0926 at 955.220 kb on - strand, within SO0926 at 955.297 kb on - strand, within SO0926 at 955.360 kb on - strand, within SO0926 at 955.417 kb on - strand, within SO0926 at 955.424 kb on + strand, within SO0926 at 955.460 kb on + strand, within SO0926 at 955.498 kb on + strand, within SO0926 at 955.502 kb on + strand, within SO0926 at 955.563 kb on + strand, within SO0926 at 955.606 kb on + strand, within SO0926 at 955.606 kb on + strand, within SO0926 at 955.606 kb on + strand, within SO0926 at 955.606 kb on + strand, within SO0926 at 955.614 kb on - strand, within SO0926 at 955.614 kb on - strand, within SO0926 at 955.624 kb on - strand, within SO0926 at 955.624 kb on - strand, within SO0926 at 955.624 kb on - strand, within SO0926 at 955.819 kb on + strand at 955.820 kb on + strand at 955.832 kb on - strand at 955.838 kb on + strand at 955.838 kb on + strand at 955.838 kb on + strand at 955.841 kb on - strand at 955.841 kb on - strand at 955.843 kb on + strand at 955.843 kb on + strand at 955.843 kb on + strand at 955.843 kb on + strand at 955.846 kb on - strand at 955.851 kb on - strand at 955.851 kb on - strand at 955.851 kb on - strand at 955.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction SBM - no RNA protect remove 953,114 - +0.9 953,129 + -0.2 953,166 - -0.6 953,178 + -0.8 953,339 + SO0923 0.17 -1.0 953,366 - SO0923 0.23 -0.2 953,366 - SO0923 0.23 -0.3 953,391 + SO0923 0.29 -0.5 953,503 + SO0923 0.56 +0.7 953,527 + SO0923 0.62 +1.0 953,542 + SO0923 0.65 -0.0 953,560 + SO0923 0.70 +0.6 953,560 + SO0923 0.70 +0.5 953,568 - SO0923 0.72 -0.1 953,568 - SO0923 0.72 +0.3 953,568 - SO0923 0.72 +0.5 953,568 - SO0923 0.72 -1.1 953,568 - SO0923 0.72 -0.5 953,568 - SO0923 0.72 +0.7 953,608 - SO0923 0.81 -0.4 953,611 - SO0923 0.82 +0.4 953,634 - SO0923 0.88 -0.9 953,652 + -0.1 953,720 + -0.1 953,805 + SO0924 0.21 +0.4 953,862 + SO0924 0.45 -0.8 953,862 + SO0924 0.45 -0.5 953,911 - SO0924 0.66 +0.1 953,915 + SO0924 0.68 +0.3 953,915 + SO0924 0.68 +0.5 953,964 + SO0924 0.89 +1.6 953,984 + -0.0 954,003 + -0.8 954,013 - +0.0 954,077 + -0.5 954,080 - +1.3 954,124 + SO0925 0.12 +0.1 954,269 + SO0925 0.26 -1.3 954,277 + SO0925 0.27 -0.2 954,277 + SO0925 0.27 +2.0 954,277 - SO0925 0.27 +0.4 954,318 + SO0925 0.31 -1.3 954,367 + SO0925 0.36 -1.4 954,367 + SO0925 0.36 -0.0 954,369 + SO0925 0.36 +0.2 954,375 - SO0925 0.37 -0.2 954,375 - SO0925 0.37 -0.6 954,385 - SO0925 0.38 -0.0 954,451 + SO0925 0.44 -1.1 954,459 - SO0925 0.45 -0.5 954,459 - SO0925 0.45 +0.5 954,527 - SO0925 0.52 +0.7 954,544 + SO0925 0.53 +0.1 954,579 + SO0925 0.57 -0.5 954,579 + SO0925 0.57 +0.6 954,586 + SO0925 0.58 -0.3 954,588 - SO0925 0.58 -0.3 954,607 - SO0925 0.60 +0.2 954,686 + SO0925 0.68 -1.6 954,686 + SO0925 0.68 +0.3 954,753 + SO0925 0.74 -0.1 954,761 - SO0925 0.75 -1.2 954,769 + SO0925 0.76 +1.4 954,890 + SO0925 0.88 -0.9 954,944 + +1.4 954,956 - +0.1 954,961 + +0.4 954,962 - +0.5 954,974 - -0.3 954,983 + -0.3 954,999 - -0.2 955,021 + -0.4 955,022 + +0.5 955,038 - +0.6 955,126 + +0.4 955,126 + +0.2 955,134 - +0.5 955,149 + -0.1 955,212 + SO0926 0.19 +0.6 955,215 - SO0926 0.20 +0.8 955,220 - SO0926 0.20 +1.4 955,297 - SO0926 0.33 +2.0 955,360 - SO0926 0.43 -1.4 955,417 - SO0926 0.53 +1.0 955,424 + SO0926 0.54 +1.0 955,460 + SO0926 0.60 +0.7 955,498 + SO0926 0.66 +2.4 955,502 + SO0926 0.66 +0.1 955,563 + SO0926 0.76 -0.7 955,606 + SO0926 0.83 +1.3 955,606 + SO0926 0.83 +0.6 955,606 + SO0926 0.83 -1.3 955,606 + SO0926 0.83 -0.8 955,614 - SO0926 0.85 -0.1 955,614 - SO0926 0.85 -0.3 955,624 - SO0926 0.86 +1.0 955,624 - SO0926 0.86 +1.4 955,624 - SO0926 0.86 -0.1 955,819 + +0.4 955,820 + +0.0 955,832 - +0.5 955,838 + -0.4 955,838 + +0.4 955,838 + -0.3 955,841 - -0.1 955,841 - -0.4 955,843 + +0.2 955,843 + +0.4 955,843 + -0.4 955,843 + -2.3 955,846 - -0.6 955,851 - -0.1 955,851 - -1.0 955,851 - +0.4 955,930 + +0.3
Or see this region's nucleotide sequence