Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1826

Experiment: BG11 with Chloride 7.8125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BG11 with Chloride 7.8125 mM
1,895,230	+				+0.5
1,895,230	+		Synpcc7942_1824	0.14	-0.7
1,895,230	+		Synpcc7942_1824	0.14	+0.1
1,895,230	+		Synpcc7942_1824	0.14	+0.6
1,895,230	+		Synpcc7942_1824	0.14	+0.5
1,895,230	+		Synpcc7942_1824	0.14	-1.4
1,895,238	-		Synpcc7942_1824	0.15	+0.1
1,895,238	-		Synpcc7942_1824	0.15	+1.4
1,895,238	-		Synpcc7942_1824	0.15	+1.0
1,895,321	-		Synpcc7942_1824	0.33	+0.3
1,895,321	-				+1.8
1,895,329	+		Synpcc7942_1824	0.35	-0.2
1,895,329	+		Synpcc7942_1824	0.35	-2.4
1,895,337	-		Synpcc7942_1824	0.37	+1.0
1,895,347	+		Synpcc7942_1824	0.39	-1.1
1,895,352	+		Synpcc7942_1824	0.40	+0.3
1,895,377	-		Synpcc7942_1824	0.45	-1.9
1,895,402	+		Synpcc7942_1824	0.51	-0.2
1,895,402	+		Synpcc7942_1824	0.51	+0.0
1,895,420	+		Synpcc7942_1824	0.55	-0.6
1,895,420	+		Synpcc7942_1824	0.55	-0.9
1,895,444	+		Synpcc7942_1824	0.60	+0.9
1,895,457	-		Synpcc7942_1824	0.63	-0.1
1,895,458	+		Synpcc7942_1824	0.63	+0.3
1,895,463	+		Synpcc7942_1824	0.64	-3.1
1,895,479	+		Synpcc7942_1824	0.67	-0.6
1,895,493	-		Synpcc7942_1824	0.70	-0.6
1,895,501	-		Synpcc7942_1824	0.72	-0.9
1,895,511	-		Synpcc7942_1824	0.74	-0.6
1,895,522	+		Synpcc7942_1824	0.77	-1.7
1,895,524	+		Synpcc7942_1824	0.77	-0.5
1,895,524	+		Synpcc7942_1824	0.77	-1.4
1,895,529	+		Synpcc7942_1824	0.78	+0.4
1,895,535	-		Synpcc7942_1824	0.79	-1.1
1,895,571	+		Synpcc7942_1824	0.87	+1.3
1,895,572	+		Synpcc7942_1824	0.87	-0.2
1,895,572	+		Synpcc7942_1824	0.87	+0.1
1,895,574	-		Synpcc7942_1824	0.88	+1.2
1,895,580	-		Synpcc7942_1824	0.89	-1.0
1,895,595	-				-0.7
1,895,597	-				+0.6
1,895,597	-				-2.2
1,895,602	-				+1.2
1,895,626	+				-1.0
1,895,634	-				+1.8
1,895,637	+				-2.4
1,895,637	+				+0.2
1,895,638	+				+2.2
1,895,638	+				+0.2
1,895,646	-				-1.0
1,895,647	-				+1.8
1,895,647	-				-0.6
1,895,649	+				+0.5
1,895,718	-				-1.2
1,895,722	-				+4.1
1,895,813	+	PgsA	Synpcc7942_1825	0.20	-0.9
1,896,215	+				-1.9
1,896,229	+				+0.4
1,896,237	-				+0.2
1,896,248	+				+1.7
1,896,260	-				-1.9
1,896,284	+				+1.1
1,896,284	+				-1.7
1,896,317	-		Synpcc7942_1826	0.10	+0.2
1,896,368	-		Synpcc7942_1826	0.15	-1.2
1,896,399	-		Synpcc7942_1826	0.19	-1.5
1,896,421	+		Synpcc7942_1826	0.21	-0.3
1,896,421	+		Synpcc7942_1826	0.21	-1.3
1,896,421	+		Synpcc7942_1826	0.21	-1.3
1,896,421	+		Synpcc7942_1826	0.21	-2.9
1,896,439	-		Synpcc7942_1826	0.23	-0.4
1,896,446	+		Synpcc7942_1826	0.24	-1.1
1,896,446	+		Synpcc7942_1826	0.24	+0.8
1,896,454	-		Synpcc7942_1826	0.25	-1.5
1,896,476	-		Synpcc7942_1826	0.27	+0.4
1,896,497	+		Synpcc7942_1826	0.29	+0.3
1,896,507	+				+1.8
1,896,507	+		Synpcc7942_1826	0.30	+0.4
1,896,507	+		Synpcc7942_1826	0.30	+1.1
1,896,507	+		Synpcc7942_1826	0.30	-0.5
1,896,529	-		Synpcc7942_1826	0.33	-2.0
1,896,552	+		Synpcc7942_1826	0.35	+0.6
1,896,559	-		Synpcc7942_1826	0.36	-1.4
1,896,561	-		Synpcc7942_1826	0.36	-0.8
1,896,561	-		Synpcc7942_1826	0.36	-1.2
1,896,572	+		Synpcc7942_1826	0.37	-0.8
1,896,594	+		Synpcc7942_1826	0.39	+0.8
1,896,612	+				+2.2
1,896,612	+		Synpcc7942_1826	0.41	-1.8
1,896,620	-		Synpcc7942_1826	0.42	-1.4
1,896,627	+		Synpcc7942_1826	0.43	-1.3
1,896,632	-		Synpcc7942_1826	0.44	-0.1
1,896,634	+		Synpcc7942_1826	0.44	-1.1
1,896,639	+		Synpcc7942_1826	0.44	-1.1
1,896,639	+		Synpcc7942_1826	0.44	+0.4
1,896,642	-		Synpcc7942_1826	0.45	-0.1
1,896,642	-		Synpcc7942_1826	0.45	-2.6
1,896,644	+		Synpcc7942_1826	0.45	-3.7
1,896,676	+		Synpcc7942_1826	0.48	-0.6
1,896,732	+		Synpcc7942_1826	0.54	+0.2
1,896,732	+		Synpcc7942_1826	0.54	-0.1
1,896,733	+				+1.2
1,896,835	+		Synpcc7942_1826	0.65	-2.0
1,896,874	-		Synpcc7942_1826	0.69	-3.3
1,896,885	+		Synpcc7942_1826	0.70	+1.4
1,896,889	-		Synpcc7942_1826	0.71	+0.5
1,896,897	+		Synpcc7942_1826	0.72	-2.1
1,896,921	+		Synpcc7942_1826	0.74	+0.2
1,896,995	-		Synpcc7942_1826	0.82	-1.0
1,896,999	+		Synpcc7942_1826	0.82	-0.7
1,897,007	-		Synpcc7942_1826	0.83	-2.8
1,897,007	-		Synpcc7942_1826	0.83	-0.9
1,897,007	-				+1.2
1,897,007	-		Synpcc7942_1826	0.83	-0.4
1,897,012	-		Synpcc7942_1826	0.84	-2.0
1,897,045	-		Synpcc7942_1826	0.87	+0.8
1,897,047	+		Synpcc7942_1826	0.88	-1.7
1,897,047	+		Synpcc7942_1826	0.88	+0.6
1,897,055	-		Synpcc7942_1826	0.88	+0.3
1,897,055	-		Synpcc7942_1826	0.88	-2.2
1,897,055	-		Synpcc7942_1826	0.88	-0.2
1,897,071	+				+0.4
1,897,079	-				+0.1
1,897,079	-				-0.0
1,897,079	-				+1.0
1,897,079	-				-0.5
1,897,118	+				-0.5
1,897,210	-				-1.9
1,897,216	+				-0.7
1,897,227	-				+2.4
1,897,228	+				+1.2
1,897,236	-				-2.1
1,897,236	-				+0.7
1,897,238	+				+0.4
1,897,246	-				-1.0
1,897,277	+				+0.4
1,897,286	-				+0.8
1,897,323	+				+0.4
1,897,323	+				-0.2
1,897,323	+				-1.3
1,897,331	-				+0.1
1,897,331	-				+1.5
1,897,331	-				+0.4
1,897,338	+				+2.2
1,897,343	+				-0.4
1,897,354	+		Synpcc7942_1827	0.11	+1.0
1,897,354	+		Synpcc7942_1827	0.11	-0.7
1,897,371	+		Synpcc7942_1827	0.13	+0.3
1,897,371	+		Synpcc7942_1827	0.13	-1.3
1,897,372	-		Synpcc7942_1827	0.14	+0.3
1,897,379	-		Synpcc7942_1827	0.15	+1.4
1,897,388	-		Synpcc7942_1827	0.16	+0.2
1,897,422	+		Synpcc7942_1827	0.22	-0.0
1,897,440	+		Synpcc7942_1827	0.24	-1.9
1,897,448	-		Synpcc7942_1827	0.26	-1.8
1,897,448	-		Synpcc7942_1827	0.26	+0.3
1,897,448	-		Synpcc7942_1827	0.26	+0.3
1,897,450	+		Synpcc7942_1827	0.26	-0.8
1,897,457	-		Synpcc7942_1827	0.27	-2.6
1,897,467	-		Synpcc7942_1827	0.29	-0.3
1,897,481	+		Synpcc7942_1827	0.31	-0.3
1,897,482	+		Synpcc7942_1827	0.31	+1.2
1,897,482	+		Synpcc7942_1827	0.31	+1.4
1,897,482	-		Synpcc7942_1827	0.31	-0.4
1,897,483	+		Synpcc7942_1827	0.31	+2.2
1,897,488	+		Synpcc7942_1827	0.32	+0.5
1,897,488	+		Synpcc7942_1827	0.32	-0.6
1,897,489	+		Synpcc7942_1827	0.32	-0.4
1,897,489	+				+0.8
1,897,490	-				+0.5
1,897,490	-		Synpcc7942_1827	0.32	-0.1
1,897,496	-		Synpcc7942_1827	0.33	-0.2
1,897,506	+		Synpcc7942_1827	0.35	-0.7
1,897,510	+		Synpcc7942_1827	0.36	-0.2
1,897,515	+		Synpcc7942_1827	0.36	-0.9
1,897,523	-		Synpcc7942_1827	0.38	+0.3
1,897,523	-		Synpcc7942_1827	0.38	+0.1
1,897,523	-		Synpcc7942_1827	0.38	-1.8
1,897,523	-		Synpcc7942_1827	0.38	-0.7
1,897,525	-		Synpcc7942_1827	0.38	-2.2
1,897,527	+		Synpcc7942_1827	0.38	+0.5
1,897,528	-		Synpcc7942_1827	0.38	-1.4
1,897,546	-		Synpcc7942_1827	0.41	-0.7
1,897,587	+		Synpcc7942_1827	0.48	-1.8
1,897,587	+				+1.2
1,897,587	+		Synpcc7942_1827	0.48	+1.4
1,897,597	+		Synpcc7942_1827	0.49	+0.4
1,897,597	+		Synpcc7942_1827	0.49	-0.9
1,897,597	+		Synpcc7942_1827	0.49	-0.4
1,897,605	-		Synpcc7942_1827	0.51	-0.2
1,897,605	-		Synpcc7942_1827	0.51	+1.7
1,897,614	+		Synpcc7942_1827	0.52	+0.5
1,897,622	-		Synpcc7942_1827	0.53	-0.9
1,897,622	-		Synpcc7942_1827	0.53	+0.2
1,897,688	+				+3.4
1,897,698	-		Synpcc7942_1827	0.66	-2.7
1,897,727	+				+0.2
1,897,732	+		Synpcc7942_1827	0.71	+1.5
1,897,739	+		Synpcc7942_1827	0.72	-0.5
1,897,758	-		Synpcc7942_1827	0.75	-3.4
1,897,762	+		Synpcc7942_1827	0.76	-0.9
1,897,780	-		Synpcc7942_1827	0.79	+0.2
1,897,813	+		Synpcc7942_1827	0.84	-0.4
1,897,821	-		Synpcc7942_1827	0.85	-0.9
1,897,821	-		Synpcc7942_1827	0.85	-0.4
1,897,844	+		Synpcc7942_1827	0.89	-1.5
1,897,849	+		Synpcc7942_1827	0.90	-1.4
1,897,849	+		Synpcc7942_1827	0.90	-2.0
1,897,856	+				+0.8
1,897,856	+				+0.3
1,897,857	-				-0.7
1,897,873	+				+0.2
1,897,884	+				+0.2
1,897,894	+				-2.3
1,897,904	-				-1.1
1,897,955	+		Synpcc7942_1828	0.16	+0.8
1,897,960	-				+0.8
1,897,962	+		Synpcc7942_1828	0.19	+1.0
1,897,962	+		Synpcc7942_1828	0.19	-1.4
1,897,963	-		Synpcc7942_1828	0.19	+0.7
1,897,970	-		Synpcc7942_1828	0.22	-2.3
1,897,970	-		Synpcc7942_1828	0.22	+2.1
1,897,974	+		Synpcc7942_1828	0.23	-0.0
1,897,975	+		Synpcc7942_1828	0.24	-0.3
1,897,982	-		Synpcc7942_1828	0.26	-2.1
1,897,983	-		Synpcc7942_1828	0.27	-0.5
1,897,983	-				+1.2
1,897,983	-		Synpcc7942_1828	0.27	-1.1
1,898,080	+		Synpcc7942_1828	0.64	-1.2
1,898,080	+		Synpcc7942_1828	0.64	+0.1
1,898,127	-		Synpcc7942_1828	0.83	-0.7
1,898,162	+				+1.4