Experiment: BG11 with Chloride 7.8125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1373 and rluA are separated by 300 nucleotides rluA and Synpcc7942_1375 are separated by 70 nucleotides Synpcc7942_1375 and Synpcc7942_1376 are separated by 199 nucleotides
Synpcc7942_1373: Synpcc7942_1373 - hydrogenase accessory protein, at 1,413,287 to 1,413,982
_1373
Synpcc7942_1374: rluA - ribosomal large subunit pseudouridine synthase D, at 1,414,283 to 1,415,914
rluA
Synpcc7942_1375: Synpcc7942_1375 - hypothetical protein, at 1,415,985 to 1,416,506
_1375
Synpcc7942_1376: Synpcc7942_1376 - hypothetical protein, at 1,416,706 to 1,417,302
_1376
Position (kb) 1414
1415
1416 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 1413.292 kb on - strand at 1413.327 kb on - strand at 1413.474 kb on - strand, within Synpcc7942_1373 at 1413.984 kb on + strand at 1414.005 kb on + strand at 1414.014 kb on + strand at 1414.022 kb on - strand at 1414.134 kb on + strand at 1414.411 kb on + strand at 1414.411 kb on + strand at 1414.420 kb on - strand at 1414.462 kb on + strand, within rluA at 1414.468 kb on - strand, within rluA at 1414.472 kb on + strand, within rluA at 1414.472 kb on + strand, within rluA at 1414.480 kb on - strand, within rluA at 1414.518 kb on + strand, within rluA at 1414.526 kb on - strand, within rluA at 1414.528 kb on + strand, within rluA at 1414.528 kb on + strand, within rluA at 1414.531 kb on - strand, within rluA at 1414.591 kb on + strand, within rluA at 1414.606 kb on + strand, within rluA at 1414.614 kb on - strand, within rluA at 1414.629 kb on + strand, within rluA at 1414.629 kb on + strand, within rluA at 1414.629 kb on + strand, within rluA at 1414.631 kb on + strand, within rluA at 1414.631 kb on - strand, within rluA at 1414.637 kb on - strand, within rluA at 1414.637 kb on - strand, within rluA at 1414.639 kb on + strand, within rluA at 1414.642 kb on - strand, within rluA at 1414.714 kb on + strand, within rluA at 1414.727 kb on + strand, within rluA at 1414.761 kb on - strand, within rluA at 1414.763 kb on + strand, within rluA at 1414.767 kb on + strand, within rluA at 1414.776 kb on + strand, within rluA at 1414.784 kb on - strand, within rluA at 1414.804 kb on - strand, within rluA at 1414.811 kb on + strand, within rluA at 1414.816 kb on + strand, within rluA at 1414.819 kb on - strand at 1414.833 kb on - strand, within rluA at 1414.877 kb on - strand, within rluA at 1414.915 kb on + strand, within rluA at 1414.915 kb on + strand, within rluA at 1414.923 kb on - strand, within rluA at 1414.923 kb on - strand, within rluA at 1414.923 kb on - strand, within rluA at 1414.923 kb on - strand, within rluA at 1414.937 kb on + strand, within rluA at 1414.946 kb on - strand, within rluA at 1414.974 kb on + strand, within rluA at 1415.040 kb on + strand, within rluA at 1415.064 kb on + strand, within rluA at 1415.075 kb on + strand, within rluA at 1415.083 kb on - strand, within rluA at 1415.123 kb on + strand, within rluA at 1415.151 kb on - strand, within rluA at 1415.152 kb on + strand, within rluA at 1415.160 kb on - strand, within rluA at 1415.175 kb on - strand, within rluA at 1415.198 kb on + strand, within rluA at 1415.206 kb on - strand, within rluA at 1415.223 kb on - strand, within rluA at 1415.252 kb on - strand, within rluA at 1415.319 kb on + strand, within rluA at 1415.358 kb on - strand at 1415.364 kb on - strand, within rluA at 1415.395 kb on + strand, within rluA at 1415.415 kb on - strand, within rluA at 1415.442 kb on + strand, within rluA at 1415.442 kb on + strand, within rluA at 1415.452 kb on + strand, within rluA at 1415.484 kb on + strand, within rluA at 1415.484 kb on + strand, within rluA at 1415.492 kb on - strand, within rluA at 1415.492 kb on - strand, within rluA at 1415.500 kb on + strand, within rluA at 1415.500 kb on + strand, within rluA at 1415.507 kb on + strand, within rluA at 1415.507 kb on + strand, within rluA at 1415.507 kb on - strand, within rluA at 1415.508 kb on - strand, within rluA at 1415.508 kb on - strand, within rluA at 1415.513 kb on - strand, within rluA at 1415.513 kb on - strand, within rluA at 1415.519 kb on + strand, within rluA at 1415.527 kb on - strand, within rluA at 1415.530 kb on - strand, within rluA at 1415.535 kb on - strand, within rluA at 1415.540 kb on - strand, within rluA at 1415.625 kb on + strand, within rluA at 1415.630 kb on + strand, within rluA at 1415.633 kb on - strand, within rluA at 1415.638 kb on - strand, within rluA at 1415.698 kb on + strand, within rluA at 1415.736 kb on + strand, within rluA at 1415.738 kb on + strand, within rluA at 1415.758 kb on + strand at 1415.776 kb on - strand at 1415.776 kb on - strand at 1415.785 kb on + strand at 1415.794 kb on + strand at 1415.794 kb on + strand at 1415.794 kb on + strand at 1415.797 kb on - strand at 1415.797 kb on - strand at 1415.797 kb on - strand at 1415.797 kb on - strand at 1415.802 kb on - strand at 1415.834 kb on - strand at 1415.835 kb on - strand at 1415.849 kb on + strand at 1415.849 kb on + strand at 1415.857 kb on - strand at 1415.857 kb on - strand at 1415.857 kb on - strand at 1415.857 kb on - strand at 1415.857 kb on - strand at 1415.857 kb on - strand at 1415.893 kb on - strand at 1415.893 kb on - strand at 1415.902 kb on - strand at 1415.945 kb on + strand at 1415.945 kb on + strand at 1415.953 kb on - strand at 1415.953 kb on - strand at 1415.953 kb on - strand at 1415.953 kb on - strand at 1415.965 kb on + strand at 1415.966 kb on + strand at 1415.973 kb on - strand at 1415.974 kb on - strand at 1415.980 kb on + strand at 1415.980 kb on + strand at 1415.987 kb on + strand at 1416.018 kb on - strand at 1416.040 kb on + strand, within Synpcc7942_1375 at 1416.045 kb on + strand, within Synpcc7942_1375 at 1416.058 kb on + strand, within Synpcc7942_1375 at 1416.077 kb on + strand, within Synpcc7942_1375 at 1416.077 kb on + strand, within Synpcc7942_1375 at 1416.085 kb on - strand, within Synpcc7942_1375 at 1416.097 kb on + strand, within Synpcc7942_1375 at 1416.130 kb on + strand, within Synpcc7942_1375 at 1416.145 kb on - strand, within Synpcc7942_1375 at 1416.147 kb on + strand, within Synpcc7942_1375 at 1416.151 kb on + strand, within Synpcc7942_1375 at 1416.184 kb on + strand, within Synpcc7942_1375 at 1416.184 kb on + strand, within Synpcc7942_1375 at 1416.203 kb on + strand, within Synpcc7942_1375 at 1416.210 kb on + strand, within Synpcc7942_1375 at 1416.210 kb on + strand, within Synpcc7942_1375 at 1416.218 kb on - strand, within Synpcc7942_1375 at 1416.248 kb on - strand, within Synpcc7942_1375 at 1416.248 kb on - strand, within Synpcc7942_1375 at 1416.264 kb on + strand, within Synpcc7942_1375 at 1416.264 kb on + strand, within Synpcc7942_1375 at 1416.275 kb on - strand, within Synpcc7942_1375 at 1416.282 kb on - strand, within Synpcc7942_1375 at 1416.324 kb on + strand, within Synpcc7942_1375 at 1416.342 kb on + strand, within Synpcc7942_1375 at 1416.342 kb on + strand, within Synpcc7942_1375 at 1416.365 kb on - strand, within Synpcc7942_1375 at 1416.366 kb on + strand, within Synpcc7942_1375 at 1416.367 kb on + strand, within Synpcc7942_1375 at 1416.382 kb on - strand, within Synpcc7942_1375 at 1416.404 kb on - strand, within Synpcc7942_1375 at 1416.411 kb on + strand, within Synpcc7942_1375 at 1416.419 kb on - strand, within Synpcc7942_1375 at 1416.479 kb on + strand at 1416.494 kb on + strand at 1416.494 kb on + strand at 1416.494 kb on + strand at 1416.494 kb on + strand at 1416.496 kb on + strand at 1416.502 kb on - strand at 1416.536 kb on + strand at 1416.544 kb on - strand at 1416.566 kb on - strand at 1416.578 kb on + strand at 1416.584 kb on + strand at 1416.584 kb on - strand at 1416.606 kb on - strand at 1416.608 kb on + strand at 1416.608 kb on + strand at 1416.616 kb on - strand at 1416.616 kb on - strand at 1416.616 kb on - strand at 1416.616 kb on - strand at 1416.633 kb on - strand at 1416.639 kb on + strand at 1416.662 kb on - strand at 1416.664 kb on + strand at 1416.672 kb on - strand at 1416.708 kb on + strand at 1416.729 kb on - strand at 1416.783 kb on - strand, within Synpcc7942_1376 at 1416.789 kb on - strand, within Synpcc7942_1376 at 1416.791 kb on + strand, within Synpcc7942_1376 at 1416.793 kb on + strand, within Synpcc7942_1376 at 1416.817 kb on + strand, within Synpcc7942_1376 at 1416.817 kb on + strand, within Synpcc7942_1376 at 1416.825 kb on - strand, within Synpcc7942_1376 at 1416.835 kb on + strand, within Synpcc7942_1376 at 1416.843 kb on - strand, within Synpcc7942_1376 at 1416.853 kb on + strand, within Synpcc7942_1376 at 1416.861 kb on - strand, within Synpcc7942_1376 at 1416.861 kb on - strand, within Synpcc7942_1376 at 1416.861 kb on - strand, within Synpcc7942_1376 at 1416.905 kb on + strand, within Synpcc7942_1376 at 1416.912 kb on + strand, within Synpcc7942_1376 at 1416.912 kb on + strand, within Synpcc7942_1376
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 7.8125 mM remove 1,413,292 - -0.9 1,413,327 - -2.2 1,413,474 - Synpcc7942_1373 0.27 +0.1 1,413,984 + -1.5 1,414,005 + -3.6 1,414,014 + +0.4 1,414,022 - -0.0 1,414,134 + +1.7 1,414,411 + -0.9 1,414,411 + +0.1 1,414,420 - +1.3 1,414,462 + rluA Synpcc7942_1374 0.11 -2.3 1,414,468 - rluA Synpcc7942_1374 0.11 -0.8 1,414,472 + rluA Synpcc7942_1374 0.12 -1.8 1,414,472 + rluA Synpcc7942_1374 0.12 -0.7 1,414,480 - rluA Synpcc7942_1374 0.12 -1.5 1,414,518 + rluA Synpcc7942_1374 0.14 -2.7 1,414,526 - rluA Synpcc7942_1374 0.15 -1.0 1,414,528 + rluA Synpcc7942_1374 0.15 -1.4 1,414,528 + rluA Synpcc7942_1374 0.15 -2.3 1,414,531 - rluA Synpcc7942_1374 0.15 -1.9 1,414,591 + rluA Synpcc7942_1374 0.19 +0.5 1,414,606 + rluA Synpcc7942_1374 0.20 -0.8 1,414,614 - rluA Synpcc7942_1374 0.20 -0.1 1,414,629 + rluA Synpcc7942_1374 0.21 -0.9 1,414,629 + rluA Synpcc7942_1374 0.21 -3.2 1,414,629 + rluA Synpcc7942_1374 0.21 -1.2 1,414,631 + rluA Synpcc7942_1374 0.21 -0.2 1,414,631 - rluA Synpcc7942_1374 0.21 -0.9 1,414,637 - rluA Synpcc7942_1374 0.22 -0.6 1,414,637 - rluA Synpcc7942_1374 0.22 +0.9 1,414,639 + rluA Synpcc7942_1374 0.22 -0.1 1,414,642 - rluA Synpcc7942_1374 0.22 -1.9 1,414,714 + rluA Synpcc7942_1374 0.26 -1.8 1,414,727 + rluA Synpcc7942_1374 0.27 -2.0 1,414,761 - rluA Synpcc7942_1374 0.29 +0.2 1,414,763 + rluA Synpcc7942_1374 0.29 -1.5 1,414,767 + rluA Synpcc7942_1374 0.30 -2.0 1,414,776 + rluA Synpcc7942_1374 0.30 -0.9 1,414,784 - rluA Synpcc7942_1374 0.31 -1.1 1,414,804 - rluA Synpcc7942_1374 0.32 -0.4 1,414,811 + rluA Synpcc7942_1374 0.32 -1.4 1,414,816 + rluA Synpcc7942_1374 0.33 -0.9 1,414,819 - +1.8 1,414,833 - rluA Synpcc7942_1374 0.34 +0.4 1,414,877 - rluA Synpcc7942_1374 0.36 -1.4 1,414,915 + rluA Synpcc7942_1374 0.39 -0.3 1,414,915 + rluA Synpcc7942_1374 0.39 -0.8 1,414,923 - rluA Synpcc7942_1374 0.39 -0.9 1,414,923 - rluA Synpcc7942_1374 0.39 -2.6 1,414,923 - rluA Synpcc7942_1374 0.39 -1.0 1,414,923 - rluA Synpcc7942_1374 0.39 -0.6 1,414,937 + rluA Synpcc7942_1374 0.40 -1.4 1,414,946 - rluA Synpcc7942_1374 0.41 -2.2 1,414,974 + rluA Synpcc7942_1374 0.42 -0.2 1,415,040 + rluA Synpcc7942_1374 0.46 -1.5 1,415,064 + rluA Synpcc7942_1374 0.48 -0.6 1,415,075 + rluA Synpcc7942_1374 0.49 +0.6 1,415,083 - rluA Synpcc7942_1374 0.49 +0.4 1,415,123 + rluA Synpcc7942_1374 0.51 +0.9 1,415,151 - rluA Synpcc7942_1374 0.53 -1.3 1,415,152 + rluA Synpcc7942_1374 0.53 -0.6 1,415,160 - rluA Synpcc7942_1374 0.54 -0.2 1,415,175 - rluA Synpcc7942_1374 0.55 -2.3 1,415,198 + rluA Synpcc7942_1374 0.56 -0.7 1,415,206 - rluA Synpcc7942_1374 0.57 -0.9 1,415,223 - rluA Synpcc7942_1374 0.58 -1.2 1,415,252 - rluA Synpcc7942_1374 0.59 -0.4 1,415,319 + rluA Synpcc7942_1374 0.63 -0.7 1,415,358 - +2.2 1,415,364 - rluA Synpcc7942_1374 0.66 +0.8 1,415,395 + rluA Synpcc7942_1374 0.68 +1.0 1,415,415 - rluA Synpcc7942_1374 0.69 -0.5 1,415,442 + rluA Synpcc7942_1374 0.71 -3.6 1,415,442 + rluA Synpcc7942_1374 0.71 -1.2 1,415,452 + rluA Synpcc7942_1374 0.72 -2.3 1,415,484 + rluA Synpcc7942_1374 0.74 -0.4 1,415,484 + rluA Synpcc7942_1374 0.74 +0.6 1,415,492 - rluA Synpcc7942_1374 0.74 -2.1 1,415,492 - rluA Synpcc7942_1374 0.74 -0.1 1,415,500 + rluA Synpcc7942_1374 0.75 -2.5 1,415,500 + rluA Synpcc7942_1374 0.75 -1.0 1,415,507 + rluA Synpcc7942_1374 0.75 -0.9 1,415,507 + rluA Synpcc7942_1374 0.75 -2.0 1,415,507 - rluA Synpcc7942_1374 0.75 -0.7 1,415,508 - rluA Synpcc7942_1374 0.75 -0.0 1,415,508 - rluA Synpcc7942_1374 0.75 +0.3 1,415,513 - rluA Synpcc7942_1374 0.75 -1.4 1,415,513 - rluA Synpcc7942_1374 0.75 -1.0 1,415,519 + rluA Synpcc7942_1374 0.76 -1.0 1,415,527 - rluA Synpcc7942_1374 0.76 +2.3 1,415,530 - rluA Synpcc7942_1374 0.76 -0.4 1,415,535 - rluA Synpcc7942_1374 0.77 -1.9 1,415,540 - rluA Synpcc7942_1374 0.77 -1.1 1,415,625 + rluA Synpcc7942_1374 0.82 -0.9 1,415,630 + rluA Synpcc7942_1374 0.83 -3.4 1,415,633 - rluA Synpcc7942_1374 0.83 -0.4 1,415,638 - rluA Synpcc7942_1374 0.83 -0.1 1,415,698 + rluA Synpcc7942_1374 0.87 +0.2 1,415,736 + rluA Synpcc7942_1374 0.89 +0.5 1,415,738 + rluA Synpcc7942_1374 0.89 -1.7 1,415,758 + +0.3 1,415,776 - -0.2 1,415,776 - -0.9 1,415,785 + -1.5 1,415,794 + -1.5 1,415,794 + -0.3 1,415,794 + -0.2 1,415,797 - +0.2 1,415,797 - +0.0 1,415,797 - -0.6 1,415,797 - -4.6 1,415,802 - -1.5 1,415,834 - -1.6 1,415,835 - -1.1 1,415,849 + -0.4 1,415,849 + -0.9 1,415,857 - +0.1 1,415,857 - -1.7 1,415,857 - -0.7 1,415,857 - -0.3 1,415,857 - +4.1 1,415,857 - -0.4 1,415,893 - +1.2 1,415,893 - -1.9 1,415,902 - +0.1 1,415,945 + -2.3 1,415,945 + -1.1 1,415,953 - -0.4 1,415,953 - -0.8 1,415,953 - -0.6 1,415,953 - +2.0 1,415,965 + +0.4 1,415,966 + -1.3 1,415,973 - -0.1 1,415,974 - -0.0 1,415,980 + +0.3 1,415,980 + -0.6 1,415,987 + +0.8 1,416,018 - -0.2 1,416,040 + Synpcc7942_1375 0.11 +0.4 1,416,045 + Synpcc7942_1375 0.11 +0.0 1,416,058 + Synpcc7942_1375 0.14 +0.3 1,416,077 + Synpcc7942_1375 0.18 -0.1 1,416,077 + Synpcc7942_1375 0.18 -0.5 1,416,085 - Synpcc7942_1375 0.19 +6.8 1,416,097 + Synpcc7942_1375 0.21 -0.6 1,416,130 + Synpcc7942_1375 0.28 +0.6 1,416,145 - Synpcc7942_1375 0.31 -1.7 1,416,147 + Synpcc7942_1375 0.31 +0.1 1,416,151 + Synpcc7942_1375 0.32 +0.9 1,416,184 + Synpcc7942_1375 0.38 +0.6 1,416,184 + Synpcc7942_1375 0.38 -0.1 1,416,203 + Synpcc7942_1375 0.42 -0.9 1,416,210 + Synpcc7942_1375 0.43 -1.0 1,416,210 + Synpcc7942_1375 0.43 +0.2 1,416,218 - Synpcc7942_1375 0.45 -1.9 1,416,248 - Synpcc7942_1375 0.50 +0.9 1,416,248 - Synpcc7942_1375 0.50 +0.8 1,416,264 + Synpcc7942_1375 0.53 +1.5 1,416,264 + Synpcc7942_1375 0.53 -2.1 1,416,275 - Synpcc7942_1375 0.56 -2.1 1,416,282 - Synpcc7942_1375 0.57 -1.7 1,416,324 + Synpcc7942_1375 0.65 -1.5 1,416,342 + Synpcc7942_1375 0.68 -0.9 1,416,342 + Synpcc7942_1375 0.68 -0.8 1,416,365 - Synpcc7942_1375 0.73 -0.1 1,416,366 + Synpcc7942_1375 0.73 +0.4 1,416,367 + Synpcc7942_1375 0.73 +0.5 1,416,382 - Synpcc7942_1375 0.76 +0.9 1,416,404 - Synpcc7942_1375 0.80 +3.6 1,416,411 + Synpcc7942_1375 0.82 -0.1 1,416,419 - Synpcc7942_1375 0.83 -1.6 1,416,479 + +1.0 1,416,494 + +0.4 1,416,494 + -0.1 1,416,494 + +0.9 1,416,494 + +0.3 1,416,496 + -1.2 1,416,502 - -1.6 1,416,536 + +1.8 1,416,544 - -0.5 1,416,566 - -2.7 1,416,578 + -0.6 1,416,584 + -2.0 1,416,584 - -0.9 1,416,606 - +0.3 1,416,608 + +0.6 1,416,608 + -1.0 1,416,616 - -0.6 1,416,616 - +2.2 1,416,616 - +0.2 1,416,616 - -0.9 1,416,633 - -2.7 1,416,639 + +0.7 1,416,662 - -0.7 1,416,664 + +0.7 1,416,672 - +0.5 1,416,708 + -0.3 1,416,729 - -0.4 1,416,783 - Synpcc7942_1376 0.13 -1.9 1,416,789 - Synpcc7942_1376 0.14 -1.0 1,416,791 + Synpcc7942_1376 0.14 -2.7 1,416,793 + Synpcc7942_1376 0.15 -0.3 1,416,817 + Synpcc7942_1376 0.19 -1.2 1,416,817 + Synpcc7942_1376 0.19 -1.2 1,416,825 - Synpcc7942_1376 0.20 -0.8 1,416,835 + Synpcc7942_1376 0.22 +0.2 1,416,843 - Synpcc7942_1376 0.23 -1.3 1,416,853 + Synpcc7942_1376 0.25 -2.0 1,416,861 - Synpcc7942_1376 0.26 +0.2 1,416,861 - Synpcc7942_1376 0.26 -0.9 1,416,861 - Synpcc7942_1376 0.26 +0.3 1,416,905 + Synpcc7942_1376 0.33 +0.7 1,416,912 + Synpcc7942_1376 0.35 -2.4 1,416,912 + Synpcc7942_1376 0.35 +1.9
Or see this region's nucleotide sequence