Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0231

Experiment: BG11 with Chloride 7.8125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0230 and Synpcc7942_0231 are separated by 97 nucleotidesSynpcc7942_0231 and aroA are separated by 7 nucleotides Synpcc7942_0230: Synpcc7942_0230 - hypothetical protein, at 226,263 to 227,309 _0230 Synpcc7942_0231: Synpcc7942_0231 - putative acetyltransferase, at 227,407 to 227,931 _0231 Synpcc7942_0232: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase, at 227,939 to 229,285 aroA Position (kb) 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 226.412 kb on - strand, within Synpcc7942_0230at 226.416 kb on - strand, within Synpcc7942_0230at 226.416 kb on - strand, within Synpcc7942_0230at 226.473 kb on - strand, within Synpcc7942_0230at 226.473 kb on - strand, within Synpcc7942_0230at 226.484 kb on + strand, within Synpcc7942_0230at 226.492 kb on - strand, within Synpcc7942_0230at 226.492 kb on - strand, within Synpcc7942_0230at 226.492 kb on - strand, within Synpcc7942_0230at 226.507 kb on + strand, within Synpcc7942_0230at 226.515 kb on - strand, within Synpcc7942_0230at 226.563 kb on - strand, within Synpcc7942_0230at 226.565 kb on + strand, within Synpcc7942_0230at 226.573 kb on - strand, within Synpcc7942_0230at 226.573 kb on - strand, within Synpcc7942_0230at 226.632 kb on + strand, within Synpcc7942_0230at 226.644 kb on + strand, within Synpcc7942_0230at 226.644 kb on + strand, within Synpcc7942_0230at 226.644 kb on + strand, within Synpcc7942_0230at 226.644 kb on + strand, within Synpcc7942_0230at 226.652 kb on - strandat 226.652 kb on - strand, within Synpcc7942_0230at 226.654 kb on + strand, within Synpcc7942_0230at 226.661 kb on - strand, within Synpcc7942_0230at 226.685 kb on - strand, within Synpcc7942_0230at 226.719 kb on - strand, within Synpcc7942_0230at 226.732 kb on + strand, within Synpcc7942_0230at 226.744 kb on - strand, within Synpcc7942_0230at 226.745 kb on - strand, within Synpcc7942_0230at 226.773 kb on - strand, within Synpcc7942_0230at 226.773 kb on - strand, within Synpcc7942_0230at 226.775 kb on + strand, within Synpcc7942_0230at 226.775 kb on - strand, within Synpcc7942_0230at 226.787 kb on + strand, within Synpcc7942_0230at 226.788 kb on - strand, within Synpcc7942_0230at 226.803 kb on + strand, within Synpcc7942_0230at 226.833 kb on + strand, within Synpcc7942_0230at 226.917 kb on + strand, within Synpcc7942_0230at 226.966 kb on - strand, within Synpcc7942_0230at 226.971 kb on - strand, within Synpcc7942_0230at 227.000 kb on - strand, within Synpcc7942_0230at 227.009 kb on - strand, within Synpcc7942_0230at 227.012 kb on + strand, within Synpcc7942_0230at 227.017 kb on + strand, within Synpcc7942_0230at 227.017 kb on + strand, within Synpcc7942_0230at 227.020 kb on - strand, within Synpcc7942_0230at 227.025 kb on - strand, within Synpcc7942_0230at 227.025 kb on - strand, within Synpcc7942_0230at 227.054 kb on + strand, within Synpcc7942_0230at 227.085 kb on - strand, within Synpcc7942_0230at 227.106 kb on + strand, within Synpcc7942_0230at 227.117 kb on + strand, within Synpcc7942_0230at 227.117 kb on + strand, within Synpcc7942_0230at 227.117 kb on + strand, within Synpcc7942_0230at 227.125 kb on - strand, within Synpcc7942_0230at 227.137 kb on + strand, within Synpcc7942_0230at 227.137 kb on + strand, within Synpcc7942_0230at 227.144 kb on - strand, within Synpcc7942_0230at 227.163 kb on + strand, within Synpcc7942_0230at 227.171 kb on - strand, within Synpcc7942_0230at 227.187 kb on + strand, within Synpcc7942_0230at 227.195 kb on - strand, within Synpcc7942_0230at 227.201 kb on - strand, within Synpcc7942_0230at 227.217 kb on - strandat 227.220 kb on - strandat 227.253 kb on + strandat 227.253 kb on + strandat 227.261 kb on - strandat 227.261 kb on - strandat 227.273 kb on - strandat 227.293 kb on - strandat 227.305 kb on + strandat 227.316 kb on + strandat 227.324 kb on - strandat 227.366 kb on + strandat 227.366 kb on + strandat 227.366 kb on + strandat 227.394 kb on - strandat 227.463 kb on + strand, within Synpcc7942_0231at 227.471 kb on - strand, within Synpcc7942_0231at 227.473 kb on + strand, within Synpcc7942_0231at 227.473 kb on + strand, within Synpcc7942_0231at 227.481 kb on - strand, within Synpcc7942_0231at 227.481 kb on - strand, within Synpcc7942_0231at 227.481 kb on - strand, within Synpcc7942_0231at 227.481 kb on - strand, within Synpcc7942_0231at 227.481 kb on - strand, within Synpcc7942_0231at 227.517 kb on + strand, within Synpcc7942_0231at 227.534 kb on + strand, within Synpcc7942_0231at 227.552 kb on + strand, within Synpcc7942_0231at 227.563 kb on - strand, within Synpcc7942_0231at 227.563 kb on - strand, within Synpcc7942_0231at 227.578 kb on + strand, within Synpcc7942_0231at 227.596 kb on + strand, within Synpcc7942_0231at 227.613 kb on + strand, within Synpcc7942_0231at 227.622 kb on + strand, within Synpcc7942_0231at 227.628 kb on + strand, within Synpcc7942_0231at 227.629 kb on + strand, within Synpcc7942_0231at 227.636 kb on - strand, within Synpcc7942_0231at 227.636 kb on - strand, within Synpcc7942_0231at 227.636 kb on - strand, within Synpcc7942_0231at 227.637 kb on - strand, within Synpcc7942_0231at 227.643 kb on - strand, within Synpcc7942_0231at 227.646 kb on + strand, within Synpcc7942_0231at 227.646 kb on + strand, within Synpcc7942_0231at 227.654 kb on - strand, within Synpcc7942_0231at 227.654 kb on - strand, within Synpcc7942_0231at 227.654 kb on - strand, within Synpcc7942_0231at 227.694 kb on + strand, within Synpcc7942_0231at 227.715 kb on + strand, within Synpcc7942_0231at 227.773 kb on + strand, within Synpcc7942_0231at 227.773 kb on + strand, within Synpcc7942_0231at 227.773 kb on + strand, within Synpcc7942_0231at 227.791 kb on + strand, within Synpcc7942_0231at 227.797 kb on - strand, within Synpcc7942_0231at 227.799 kb on - strand, within Synpcc7942_0231at 227.830 kb on - strand, within Synpcc7942_0231at 227.832 kb on - strand, within Synpcc7942_0231at 227.896 kb on - strandat 227.941 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BG11 with Chloride 7.8125 mM
remove
226,412 - Synpcc7942_0230 0.14 +0.1
226,416 - Synpcc7942_0230 0.15 -0.9
226,416 - Synpcc7942_0230 0.15 +0.8
226,473 - Synpcc7942_0230 0.20 -0.5
226,473 - Synpcc7942_0230 0.20 -1.6
226,484 + Synpcc7942_0230 0.21 +1.5
226,492 - Synpcc7942_0230 0.22 -2.0
226,492 - Synpcc7942_0230 0.22 -0.0
226,492 - Synpcc7942_0230 0.22 -1.2
226,507 + Synpcc7942_0230 0.23 +1.4
226,515 - Synpcc7942_0230 0.24 -0.7
226,563 - Synpcc7942_0230 0.29 +1.3
226,565 + Synpcc7942_0230 0.29 +0.5
226,573 - Synpcc7942_0230 0.30 +0.5
226,573 - Synpcc7942_0230 0.30 -0.3
226,632 + Synpcc7942_0230 0.35 -1.1
226,644 + Synpcc7942_0230 0.36 -0.3
226,644 + Synpcc7942_0230 0.36 +0.8
226,644 + Synpcc7942_0230 0.36 -1.3
226,644 + Synpcc7942_0230 0.36 -0.4
226,652 - -0.0
226,652 - Synpcc7942_0230 0.37 -1.6
226,654 + Synpcc7942_0230 0.37 +1.4
226,661 - Synpcc7942_0230 0.38 -1.7
226,685 - Synpcc7942_0230 0.40 +0.6
226,719 - Synpcc7942_0230 0.44 -1.6
226,732 + Synpcc7942_0230 0.45 -1.0
226,744 - Synpcc7942_0230 0.46 -2.1
226,745 - Synpcc7942_0230 0.46 +0.3
226,773 - Synpcc7942_0230 0.49 -2.8
226,773 - Synpcc7942_0230 0.49 +1.2
226,775 + Synpcc7942_0230 0.49 -0.6
226,775 - Synpcc7942_0230 0.49 -0.2
226,787 + Synpcc7942_0230 0.50 +0.9
226,788 - Synpcc7942_0230 0.50 +1.0
226,803 + Synpcc7942_0230 0.52 -0.9
226,833 + Synpcc7942_0230 0.54 -1.8
226,917 + Synpcc7942_0230 0.62 +0.8
226,966 - Synpcc7942_0230 0.67 -0.8
226,971 - Synpcc7942_0230 0.68 -1.4
227,000 - Synpcc7942_0230 0.70 +0.8
227,009 - Synpcc7942_0230 0.71 -0.7
227,012 + Synpcc7942_0230 0.72 -1.0
227,017 + Synpcc7942_0230 0.72 +0.8
227,017 + Synpcc7942_0230 0.72 -0.9
227,020 - Synpcc7942_0230 0.72 -0.5
227,025 - Synpcc7942_0230 0.73 +0.1
227,025 - Synpcc7942_0230 0.73 -0.9
227,054 + Synpcc7942_0230 0.76 +1.0
227,085 - Synpcc7942_0230 0.79 +2.5
227,106 + Synpcc7942_0230 0.81 +0.2
227,117 + Synpcc7942_0230 0.82 +0.5
227,117 + Synpcc7942_0230 0.82 -1.6
227,117 + Synpcc7942_0230 0.82 -0.4
227,125 - Synpcc7942_0230 0.82 -0.5
227,137 + Synpcc7942_0230 0.83 -1.8
227,137 + Synpcc7942_0230 0.83 +1.2
227,144 - Synpcc7942_0230 0.84 +0.2
227,163 + Synpcc7942_0230 0.86 +0.9
227,171 - Synpcc7942_0230 0.87 -0.7
227,187 + Synpcc7942_0230 0.88 +2.2
227,195 - Synpcc7942_0230 0.89 -0.1
227,201 - Synpcc7942_0230 0.90 +2.1
227,217 - -3.4
227,220 - +0.3
227,253 + +0.3
227,253 + -2.1
227,261 - -0.9
227,261 - -0.2
227,273 - +0.8
227,293 - -0.8
227,305 + -0.6
227,316 + -0.8
227,324 - +0.9
227,366 + +0.3
227,366 + -0.7
227,366 + +1.1
227,394 - +0.8
227,463 + Synpcc7942_0231 0.11 -1.8
227,471 - Synpcc7942_0231 0.12 +0.6
227,473 + Synpcc7942_0231 0.13 -3.4
227,473 + Synpcc7942_0231 0.13 -1.2
227,481 - Synpcc7942_0231 0.14 +0.1
227,481 - Synpcc7942_0231 0.14 -0.0
227,481 - Synpcc7942_0231 0.14 -2.3
227,481 - Synpcc7942_0231 0.14 -0.4
227,481 - Synpcc7942_0231 0.14 +0.6
227,517 + Synpcc7942_0231 0.21 +0.1
227,534 + Synpcc7942_0231 0.24 -0.8
227,552 + Synpcc7942_0231 0.28 +1.4
227,563 - Synpcc7942_0231 0.30 +1.1
227,563 - Synpcc7942_0231 0.30 +0.2
227,578 + Synpcc7942_0231 0.33 -0.2
227,596 + Synpcc7942_0231 0.36 -0.0
227,613 + Synpcc7942_0231 0.39 -1.7
227,622 + Synpcc7942_0231 0.41 -1.3
227,628 + Synpcc7942_0231 0.42 -0.5
227,629 + Synpcc7942_0231 0.42 +2.7
227,636 - Synpcc7942_0231 0.44 +0.5
227,636 - Synpcc7942_0231 0.44 -0.8
227,636 - Synpcc7942_0231 0.44 +0.6
227,637 - Synpcc7942_0231 0.44 +0.6
227,643 - Synpcc7942_0231 0.45 -0.7
227,646 + Synpcc7942_0231 0.46 -0.2
227,646 + Synpcc7942_0231 0.46 -1.4
227,654 - Synpcc7942_0231 0.47 -0.6
227,654 - Synpcc7942_0231 0.47 +0.5
227,654 - Synpcc7942_0231 0.47 -0.2
227,694 + Synpcc7942_0231 0.55 -2.6
227,715 + Synpcc7942_0231 0.59 -2.1
227,773 + Synpcc7942_0231 0.70 +0.5
227,773 + Synpcc7942_0231 0.70 -1.9
227,773 + Synpcc7942_0231 0.70 +0.8
227,791 + Synpcc7942_0231 0.73 -1.0
227,797 - Synpcc7942_0231 0.74 -0.0
227,799 - Synpcc7942_0231 0.75 +0.4
227,830 - Synpcc7942_0231 0.81 +2.1
227,832 - Synpcc7942_0231 0.81 -2.2
227,896 - -0.5
227,941 - -0.1

Or see this region's nucleotide sequence