Experiment: BG11 with Chloride 7.8125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0013 and Synpcc7942_0014 are separated by 38 nucleotides Synpcc7942_0014 and Synpcc7942_0015 are separated by 165 nucleotides Synpcc7942_0015 and Synpcc7942_0016 are separated by 771 nucleotides
Synpcc7942_0013: Synpcc7942_0013 - hypothetical protein, at 12,321 to 13,028
_0013
Synpcc7942_0014: Synpcc7942_0014 - hypothetical protein, at 13,067 to 13,411
_0014
Synpcc7942_0015: Synpcc7942_0015 - putative hydroxylase, at 13,577 to 14,248
_0015
Synpcc7942_0016: Synpcc7942_0016 - hypothetical protein, at 15,020 to 15,604
_0016
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 12.596 kb on + strand, within Synpcc7942_0013 at 12.604 kb on - strand, within Synpcc7942_0013 at 12.625 kb on + strand, within Synpcc7942_0013 at 12.641 kb on - strand, within Synpcc7942_0013 at 12.641 kb on - strand, within Synpcc7942_0013 at 12.642 kb on - strand, within Synpcc7942_0013 at 12.669 kb on + strand, within Synpcc7942_0013 at 12.669 kb on + strand, within Synpcc7942_0013 at 12.769 kb on - strand, within Synpcc7942_0013 at 12.789 kb on - strand, within Synpcc7942_0013 at 12.862 kb on - strand, within Synpcc7942_0013 at 12.875 kb on + strand, within Synpcc7942_0013 at 12.960 kb on + strand at 12.960 kb on + strand at 12.960 kb on + strand at 12.960 kb on + strand at 12.960 kb on + strand at 12.968 kb on - strand at 13.021 kb on + strand at 13.021 kb on + strand at 13.060 kb on - strand at 13.082 kb on - strand at 13.115 kb on - strand, within Synpcc7942_0014 at 13.115 kb on - strand, within Synpcc7942_0014 at 13.461 kb on + strand at 13.461 kb on + strand at 13.462 kb on - strand at 13.469 kb on - strand at 13.472 kb on + strand at 13.481 kb on - strand at 13.499 kb on - strand at 13.503 kb on + strand at 13.511 kb on - strand at 13.511 kb on - strand at 13.541 kb on + strand at 13.547 kb on - strand at 13.549 kb on - strand at 13.553 kb on - strand at 13.557 kb on - strand at 13.570 kb on - strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.579 kb on + strand at 13.582 kb on - strand at 13.582 kb on - strand at 13.582 kb on - strand at 13.582 kb on - strand at 13.582 kb on - strand at 13.582 kb on - strand at 13.582 kb on - strand at 13.587 kb on - strand at 13.637 kb on + strand at 13.645 kb on - strand, within Synpcc7942_0015 at 13.679 kb on - strand, within Synpcc7942_0015 at 13.735 kb on - strand, within Synpcc7942_0015 at 13.749 kb on + strand, within Synpcc7942_0015 at 13.749 kb on + strand, within Synpcc7942_0015 at 13.776 kb on - strand, within Synpcc7942_0015 at 13.776 kb on - strand, within Synpcc7942_0015 at 13.776 kb on - strand at 13.778 kb on + strand, within Synpcc7942_0015 at 13.781 kb on - strand, within Synpcc7942_0015 at 13.783 kb on + strand, within Synpcc7942_0015 at 13.786 kb on - strand, within Synpcc7942_0015 at 13.786 kb on - strand, within Synpcc7942_0015 at 13.786 kb on - strand, within Synpcc7942_0015 at 13.791 kb on - strand, within Synpcc7942_0015 at 13.802 kb on - strand, within Synpcc7942_0015 at 13.824 kb on + strand, within Synpcc7942_0015 at 13.829 kb on + strand, within Synpcc7942_0015 at 13.829 kb on + strand, within Synpcc7942_0015 at 13.832 kb on - strand, within Synpcc7942_0015 at 13.834 kb on + strand, within Synpcc7942_0015 at 13.834 kb on + strand, within Synpcc7942_0015 at 13.834 kb on + strand, within Synpcc7942_0015 at 13.842 kb on - strand, within Synpcc7942_0015 at 13.842 kb on - strand, within Synpcc7942_0015 at 13.842 kb on - strand, within Synpcc7942_0015 at 13.842 kb on - strand, within Synpcc7942_0015 at 13.846 kb on + strand, within Synpcc7942_0015 at 13.848 kb on + strand, within Synpcc7942_0015 at 13.856 kb on + strand, within Synpcc7942_0015 at 13.856 kb on + strand, within Synpcc7942_0015 at 13.864 kb on - strand, within Synpcc7942_0015 at 13.864 kb on - strand, within Synpcc7942_0015 at 13.869 kb on + strand, within Synpcc7942_0015 at 13.870 kb on - strand, within Synpcc7942_0015 at 13.870 kb on - strand, within Synpcc7942_0015 at 13.879 kb on + strand, within Synpcc7942_0015 at 13.907 kb on + strand, within Synpcc7942_0015 at 13.910 kb on - strand, within Synpcc7942_0015 at 13.915 kb on - strand, within Synpcc7942_0015 at 13.967 kb on + strand, within Synpcc7942_0015 at 13.983 kb on + strand, within Synpcc7942_0015 at 13.991 kb on - strand, within Synpcc7942_0015 at 14.016 kb on + strand, within Synpcc7942_0015 at 14.022 kb on + strand, within Synpcc7942_0015 at 14.034 kb on + strand, within Synpcc7942_0015 at 14.042 kb on - strand, within Synpcc7942_0015 at 14.181 kb on - strand at 14.182 kb on + strand at 14.182 kb on + strand at 14.192 kb on + strand at 14.200 kb on - strand at 14.207 kb on + strand at 14.215 kb on - strand at 14.225 kb on - strand at 14.228 kb on + strand at 14.236 kb on - strand at 14.364 kb on + strand at 14.372 kb on - strand at 14.383 kb on - strand at 14.456 kb on - strand at 14.466 kb on + strand at 14.474 kb on - strand at 14.484 kb on - strand at 14.498 kb on + strand at 14.498 kb on + strand at 14.506 kb on - strand at 14.506 kb on - strand at 14.517 kb on - strand at 14.522 kb on + strand at 14.522 kb on + strand at 14.522 kb on - strand at 14.524 kb on + strand at 14.530 kb on - strand at 14.530 kb on - strand at 14.547 kb on + strand at 14.552 kb on + strand at 14.555 kb on - strand at 14.560 kb on + strand at 14.569 kb on + strand at 14.587 kb on - strand at 14.605 kb on + strand at 14.613 kb on + strand at 14.613 kb on + strand at 14.613 kb on + strand at 14.613 kb on - strand at 14.621 kb on - strand at 14.621 kb on - strand at 14.658 kb on + strand at 14.666 kb on - strand at 14.676 kb on - strand at 14.703 kb on + strand at 14.703 kb on + strand at 14.711 kb on - strand at 14.729 kb on - strand at 14.769 kb on + strand at 14.769 kb on - strand at 14.774 kb on + strand at 14.779 kb on - strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.801 kb on - strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.822 kb on + strand at 14.830 kb on - strand at 14.830 kb on - strand at 14.830 kb on - strand at 14.832 kb on + strand at 14.840 kb on - strand at 14.840 kb on - strand at 14.886 kb on + strand at 14.894 kb on - strand at 14.901 kb on + strand at 14.926 kb on + strand at 14.934 kb on - strand at 14.941 kb on - strand at 15.023 kb on - strand at 15.167 kb on + strand, within Synpcc7942_0016 at 15.168 kb on - strand, within Synpcc7942_0016 at 15.175 kb on - strand, within Synpcc7942_0016 at 15.175 kb on - strand, within Synpcc7942_0016 at 15.232 kb on - strand, within Synpcc7942_0016
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with Chloride 7.8125 mM remove 12,596 + Synpcc7942_0013 0.39 -2.2 12,604 - Synpcc7942_0013 0.40 +0.1 12,625 + Synpcc7942_0013 0.43 +2.8 12,641 - Synpcc7942_0013 0.45 -0.8 12,641 - Synpcc7942_0013 0.45 -1.6 12,642 - Synpcc7942_0013 0.45 -0.7 12,669 + Synpcc7942_0013 0.49 +0.0 12,669 + Synpcc7942_0013 0.49 +0.3 12,769 - Synpcc7942_0013 0.63 -0.8 12,789 - Synpcc7942_0013 0.66 -1.2 12,862 - Synpcc7942_0013 0.76 +0.4 12,875 + Synpcc7942_0013 0.78 +0.8 12,960 + -0.0 12,960 + +2.8 12,960 + -1.8 12,960 + +0.6 12,960 + -0.5 12,968 - -2.8 13,021 + +1.8 13,021 + +0.5 13,060 - +0.8 13,082 - -0.8 13,115 - Synpcc7942_0014 0.14 -0.7 13,115 - Synpcc7942_0014 0.14 -1.1 13,461 + -0.0 13,461 + -1.2 13,462 - +1.5 13,469 - -0.9 13,472 + +1.5 13,481 - +1.8 13,499 - -0.7 13,503 + -0.5 13,511 - +0.4 13,511 - +0.6 13,541 + +0.2 13,547 - -1.2 13,549 - +0.7 13,553 - +1.1 13,557 - -2.6 13,570 - +1.2 13,574 + -2.3 13,574 + -1.9 13,574 + +1.8 13,574 + +1.0 13,574 + +0.5 13,574 + -1.9 13,574 + -0.4 13,574 + -0.7 13,574 + +2.1 13,574 + +0.9 13,574 + -0.8 13,579 + +1.9 13,582 - -0.0 13,582 - -1.9 13,582 - -1.3 13,582 - -0.3 13,582 - -1.3 13,582 - -1.5 13,582 - -1.5 13,587 - -0.0 13,637 + -1.2 13,645 - Synpcc7942_0015 0.10 -1.5 13,679 - Synpcc7942_0015 0.15 +0.3 13,735 - Synpcc7942_0015 0.24 -0.1 13,749 + Synpcc7942_0015 0.26 +2.1 13,749 + Synpcc7942_0015 0.26 -0.4 13,776 - Synpcc7942_0015 0.30 +0.8 13,776 - Synpcc7942_0015 0.30 -1.2 13,776 - -0.0 13,778 + Synpcc7942_0015 0.30 +1.1 13,781 - Synpcc7942_0015 0.30 +0.2 13,783 + Synpcc7942_0015 0.31 +0.1 13,786 - Synpcc7942_0015 0.31 -0.7 13,786 - Synpcc7942_0015 0.31 +1.4 13,786 - Synpcc7942_0015 0.31 +2.3 13,791 - Synpcc7942_0015 0.32 -0.2 13,802 - Synpcc7942_0015 0.33 +0.5 13,824 + Synpcc7942_0015 0.37 +0.8 13,829 + Synpcc7942_0015 0.38 +1.4 13,829 + Synpcc7942_0015 0.38 -1.1 13,832 - Synpcc7942_0015 0.38 -0.9 13,834 + Synpcc7942_0015 0.38 -0.8 13,834 + Synpcc7942_0015 0.38 -1.5 13,834 + Synpcc7942_0015 0.38 -0.1 13,842 - Synpcc7942_0015 0.39 +0.3 13,842 - Synpcc7942_0015 0.39 +0.6 13,842 - Synpcc7942_0015 0.39 -0.7 13,842 - Synpcc7942_0015 0.39 +0.0 13,846 + Synpcc7942_0015 0.40 +1.0 13,848 + Synpcc7942_0015 0.40 +0.2 13,856 + Synpcc7942_0015 0.42 +0.3 13,856 + Synpcc7942_0015 0.42 -0.0 13,864 - Synpcc7942_0015 0.43 +1.6 13,864 - Synpcc7942_0015 0.43 +0.3 13,869 + Synpcc7942_0015 0.43 +1.5 13,870 - Synpcc7942_0015 0.44 -0.1 13,870 - Synpcc7942_0015 0.44 -0.3 13,879 + Synpcc7942_0015 0.45 +0.1 13,907 + Synpcc7942_0015 0.49 +1.4 13,910 - Synpcc7942_0015 0.50 -0.1 13,915 - Synpcc7942_0015 0.50 +0.5 13,967 + Synpcc7942_0015 0.58 -0.8 13,983 + Synpcc7942_0015 0.60 -0.3 13,991 - Synpcc7942_0015 0.62 -1.9 14,016 + Synpcc7942_0015 0.65 -0.1 14,022 + Synpcc7942_0015 0.66 -0.9 14,034 + Synpcc7942_0015 0.68 +1.8 14,042 - Synpcc7942_0015 0.69 -0.5 14,181 - +0.1 14,182 + +0.5 14,182 + +0.2 14,192 + -1.6 14,200 - +1.6 14,207 + -0.3 14,215 - -2.8 14,225 - -0.2 14,228 + -0.9 14,236 - -0.8 14,364 + -0.2 14,372 - -0.0 14,383 - -0.7 14,456 - -0.0 14,466 + +0.9 14,474 - +0.5 14,484 - -0.5 14,498 + -1.0 14,498 + +0.0 14,506 - -0.3 14,506 - -0.8 14,517 - +0.8 14,522 + -0.3 14,522 + -3.0 14,522 - -0.8 14,524 + -1.9 14,530 - +1.0 14,530 - +0.8 14,547 + -1.1 14,552 + -1.4 14,555 - +0.2 14,560 + -1.9 14,569 + -0.9 14,587 - -0.9 14,605 + -0.2 14,613 + +0.8 14,613 + -0.9 14,613 + +0.8 14,613 - +0.5 14,621 - -0.0 14,621 - -0.3 14,658 + -1.5 14,666 - -1.4 14,676 - +0.7 14,703 + -0.3 14,703 + -1.0 14,711 - -0.9 14,729 - -0.7 14,769 + +0.6 14,769 - +0.0 14,774 + -1.0 14,779 - -1.3 14,801 - +0.7 14,801 - -2.4 14,801 - -0.6 14,822 + +0.8 14,822 + -2.0 14,822 + -1.2 14,822 + +1.3 14,822 + +0.0 14,822 + -0.9 14,830 - -0.3 14,830 - -0.9 14,830 - +0.2 14,832 + -1.5 14,840 - +0.2 14,840 - +0.5 14,886 + -0.5 14,894 - +0.4 14,901 + -0.7 14,926 + +0.8 14,934 - -0.9 14,941 - -0.1 15,023 - -2.0 15,167 + Synpcc7942_0016 0.25 +1.3 15,168 - Synpcc7942_0016 0.25 +1.2 15,175 - Synpcc7942_0016 0.26 +0.5 15,175 - Synpcc7942_0016 0.26 +1.5 15,232 - Synpcc7942_0016 0.36 +0.0
Or see this region's nucleotide sequence