Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37300

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,838,162	+		RR42_RS37295	0.10	-1.9
3,838,162	+		RR42_RS37295	0.10	-0.7
3,838,231	+		RR42_RS37295	0.17	+1.1
3,838,231	+		RR42_RS37295	0.17	-2.7
3,838,232	-		RR42_RS37295	0.17	-0.0
3,838,399	+		RR42_RS37295	0.34	-0.8
3,838,400	-		RR42_RS37295	0.34	+2.9
3,838,471	+		RR42_RS37295	0.41	-0.5
3,838,504	+		RR42_RS37295	0.44	-2.0
3,838,504	+		RR42_RS37295	0.44	+0.3
3,838,504	+		RR42_RS37295	0.44	-2.0
3,838,504	+		RR42_RS37295	0.44	-0.7
3,838,504	+		RR42_RS37295	0.44	-2.5
3,838,504	+		RR42_RS37295	0.44	-0.1
3,838,505	-		RR42_RS37295	0.44	+1.0
3,838,505	-		RR42_RS37295	0.44	-0.3
3,838,505	-		RR42_RS37295	0.44	+0.2
3,838,607	-		RR42_RS37295	0.54	-2.5
3,838,698	+		RR42_RS37295	0.63	-0.5
3,838,698	+		RR42_RS37295	0.63	+1.3
3,838,699	-		RR42_RS37295	0.63	+2.1
3,838,699	-		RR42_RS37295	0.63	-0.0
3,838,741	+		RR42_RS37295	0.67	-0.1
3,838,778	-		RR42_RS37295	0.71	-0.0
3,838,955	-		RR42_RS37295	0.88	+0.6
3,838,955	-		RR42_RS37295	0.88	-3.2
3,838,955	-		RR42_RS37295	0.88	-1.7
3,838,987	+				+0.3
3,838,987	+				-1.0
3,838,987	+				-1.7
3,838,988	-				-0.8
3,839,003	+				-1.0
3,839,003	+				+0.8
3,839,004	-				+1.2
3,839,088	+				+0.2
3,839,089	-				+0.3
3,839,089	-				+0.4
3,839,089	-				-0.0
3,839,089	-				-1.0
3,839,341	+		RR42_RS37300	0.11	+1.9
3,839,341	+		RR42_RS37300	0.11	-0.2
3,839,341	+		RR42_RS37300	0.11	-0.4
3,839,399	+		RR42_RS37300	0.14	+0.5
3,839,399	+		RR42_RS37300	0.14	+0.9
3,839,400	-		RR42_RS37300	0.14	+1.9
3,839,400	-		RR42_RS37300	0.14	-2.4
3,839,543	-		RR42_RS37300	0.22	-1.6
3,839,632	+		RR42_RS37300	0.27	+0.9
3,839,632	+		RR42_RS37300	0.27	-0.5
3,839,632	+		RR42_RS37300	0.27	-1.5
3,839,633	-		RR42_RS37300	0.27	-0.1
3,839,633	-		RR42_RS37300	0.27	+2.7
3,839,633	-		RR42_RS37300	0.27	-2.9
3,839,633	-		RR42_RS37300	0.27	+0.3
3,839,633	-		RR42_RS37300	0.27	+0.0
3,839,691	+		RR42_RS37300	0.31	+0.1
3,839,828	+		RR42_RS37300	0.38	+1.5
3,839,829	-		RR42_RS37300	0.38	-0.5
3,839,842	+		RR42_RS37300	0.39	-0.5
3,839,842	+		RR42_RS37300	0.39	-3.0
3,839,842	+		RR42_RS37300	0.39	+0.5
3,839,843	-		RR42_RS37300	0.39	-2.1
3,839,843	-		RR42_RS37300	0.39	+0.4
3,839,869	+		RR42_RS37300	0.41	+0.0
3,839,869	+		RR42_RS37300	0.41	-1.0
3,839,869	+		RR42_RS37300	0.41	+2.1
3,839,870	-		RR42_RS37300	0.41	-1.0
3,839,870	-		RR42_RS37300	0.41	-0.9
3,839,992	+		RR42_RS37300	0.48	-0.3
3,839,992	+		RR42_RS37300	0.48	+0.2
3,839,992	+		RR42_RS37300	0.48	+0.8
3,839,993	-		RR42_RS37300	0.48	-1.1
3,839,993	-		RR42_RS37300	0.48	-0.6
3,839,993	-		RR42_RS37300	0.48	+0.2
3,839,993	-		RR42_RS37300	0.48	-1.1
3,840,136	+		RR42_RS37300	0.56	-0.7
3,840,136	+		RR42_RS37300	0.56	-0.1
3,840,136	+		RR42_RS37300	0.56	-2.8
3,840,137	-		RR42_RS37300	0.56	+0.0
3,840,174	+		RR42_RS37300	0.58	-2.7
3,840,174	+		RR42_RS37300	0.58	-1.4
3,840,376	+		RR42_RS37300	0.70	+1.5
3,840,376	+		RR42_RS37300	0.70	+1.5
3,840,377	-		RR42_RS37300	0.70	+1.2
3,840,412	+		RR42_RS37300	0.72	+1.1
3,840,412	+		RR42_RS37300	0.72	+0.5
3,840,412	+		RR42_RS37300	0.72	-0.4
3,840,412	+		RR42_RS37300	0.72	-3.5
3,840,413	-		RR42_RS37300	0.72	-2.6
3,840,413	-		RR42_RS37300	0.72	-3.3
3,840,413	-		RR42_RS37300	0.72	+0.5
3,840,413	-		RR42_RS37300	0.72	+1.3
3,840,413	-		RR42_RS37300	0.72	-2.7
3,840,413	-		RR42_RS37300	0.72	-0.8
3,840,432	+		RR42_RS37300	0.73	+1.3
3,840,433	-		RR42_RS37300	0.73	-0.4
3,840,433	-		RR42_RS37300	0.73	-0.7
3,840,466	+		RR42_RS37300	0.75	-0.5
3,840,467	-		RR42_RS37300	0.75	-0.4
3,840,568	+		RR42_RS37300	0.81	+0.5
3,840,569	-		RR42_RS37300	0.81	-1.1
3,841,059	+		RR42_RS37305	0.15	+1.9
3,841,059	+		RR42_RS37305	0.15	+0.1
3,841,060	-		RR42_RS37305	0.15	-0.2
3,841,060	-		RR42_RS37305	0.15	-0.5
3,841,060	-		RR42_RS37305	0.15	+0.3
3,841,060	-		RR42_RS37305	0.15	+0.4
3,841,094	-		RR42_RS37305	0.18	-0.4
3,841,143	-		RR42_RS37305	0.22	+0.1
3,841,219	+		RR42_RS37305	0.29	-0.7
3,841,299	+		RR42_RS37305	0.36	-1.4
3,841,299	+		RR42_RS37305	0.36	-0.1
3,841,300	-		RR42_RS37305	0.36	-1.9
3,841,300	-		RR42_RS37305	0.36	-2.1
3,841,300	-		RR42_RS37305	0.36	-0.2
3,841,601	+		RR42_RS37305	0.64	-1.1
3,841,602	-		RR42_RS37305	0.64	-1.7
3,841,671	+		RR42_RS37305	0.70	+0.9
3,841,713	+		RR42_RS37305	0.74	-0.6
3,841,714	-		RR42_RS37305	0.74	-1.0
3,841,714	-		RR42_RS37305	0.74	-2.0
3,841,714	-		RR42_RS37305	0.74	-1.5
3,841,734	+		RR42_RS37305	0.76	-0.3
3,841,786	+		RR42_RS37305	0.81	-1.5