Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36860

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,721,529	+		RR42_RS36855	0.23	-2.0
3,721,529	+		RR42_RS36855	0.23	-0.2
3,721,600	-		RR42_RS36855	0.29	-0.2
3,721,640	-		RR42_RS36855	0.33	+0.8
3,721,640	-		RR42_RS36855	0.33	-2.0
3,721,640	-		RR42_RS36855	0.33	+1.1
3,721,736	+		RR42_RS36855	0.41	+1.6
3,721,840	+		RR42_RS36855	0.50	-1.6
3,721,840	-		RR42_RS36855	0.50	-1.8
3,721,877	+		RR42_RS36855	0.54	+0.0
3,721,877	+		RR42_RS36855	0.54	-0.3
3,721,877	+		RR42_RS36855	0.54	+0.6
3,721,905	-		RR42_RS36855	0.56	+0.7
3,722,013	+		RR42_RS36855	0.65	-2.3
3,722,013	+		RR42_RS36855	0.65	+1.3
3,722,013	+		RR42_RS36855	0.65	-0.4
3,722,047	+		RR42_RS36855	0.68	-0.2
3,722,047	+		RR42_RS36855	0.68	-0.3
3,722,048	-		RR42_RS36855	0.68	-0.4
3,722,072	+		RR42_RS36855	0.70	-1.1
3,722,108	+		RR42_RS36855	0.74	+0.4
3,722,109	-		RR42_RS36855	0.74	+2.1
3,722,109	-		RR42_RS36855	0.74	-1.6
3,722,109	-		RR42_RS36855	0.74	-0.9
3,722,109	-		RR42_RS36855	0.74	-1.0
3,722,246	+		RR42_RS36855	0.86	-1.5
3,722,256	+		RR42_RS36855	0.87	+0.7
3,722,256	+		RR42_RS36855	0.87	+3.7
3,722,256	+		RR42_RS36855	0.87	+0.9
3,722,256	+		RR42_RS36855	0.87	+2.4
3,722,256	+		RR42_RS36855	0.87	-1.2
3,722,257	-		RR42_RS36855	0.87	-0.8
3,722,257	-		RR42_RS36855	0.87	-1.2
3,722,333	-				-0.2
3,722,333	-				-0.4
3,722,333	-				+0.2
3,722,389	+				+0.1
3,722,389	+				-0.6
3,722,390	-				-1.7
3,722,390	-				-0.5
3,722,390	-				-0.6
3,722,390	-				-0.6
3,722,461	-				+0.9
3,722,517	+				+1.2
3,722,518	-				-1.5
3,722,518	-				+0.7
3,722,518	-				+1.6
3,722,518	-				-0.0
3,722,519	+				+1.5
3,722,519	+				+2.8
3,722,520	-				+0.5
3,722,549	+				+1.0
3,722,551	+				+0.8
3,722,552	-				-2.9
3,722,555	+				+0.6
3,722,555	+				-0.6
3,722,555	+				-1.1
3,722,568	+				+0.5
3,722,569	-		RR42_RS36860	0.10	+0.9
3,722,579	+		RR42_RS36860	0.12	-1.2
3,722,590	-		RR42_RS36860	0.14	+0.7
3,722,600	+		RR42_RS36860	0.16	+0.7
3,722,601	-		RR42_RS36860	0.16	+0.4
3,722,601	-		RR42_RS36860	0.16	+0.1
3,722,601	-		RR42_RS36860	0.16	+1.1
3,722,601	-		RR42_RS36860	0.16	-1.5
3,722,785	-		RR42_RS36860	0.52	+0.5
3,722,809	+		RR42_RS36860	0.56	+0.8
3,722,912	+		RR42_RS36860	0.76	+2.1
3,722,992	+				+0.9
3,723,007	+				-0.2
3,723,007	+				-0.6
3,723,038	+				+2.6
3,723,038	+				-0.7
3,723,038	+				+1.8
3,723,038	+				+0.4
3,723,039	-				-0.9
3,723,039	-				+0.9
3,723,039	-				+1.2
3,723,089	+				+0.9
3,723,089	+				+0.2
3,723,097	+				+0.3
3,723,098	-				-0.3
3,723,109	+				-0.4
3,723,110	-				-1.5
3,723,130	-				-0.8
3,723,174	-				-1.2
3,723,198	-				+0.4
3,723,198	-				-2.1
3,723,348	+				-1.0
3,723,349	-				+0.8
3,723,361	+				+1.7
3,723,433	-		RR42_RS36865	0.10	+0.0
3,723,433	-		RR42_RS36865	0.10	+0.1
3,723,433	-		RR42_RS36865	0.10	-2.1
3,723,447	+		RR42_RS36865	0.11	+0.0
3,723,448	-		RR42_RS36865	0.11	+0.8
3,723,578	-		RR42_RS36865	0.18	+1.1
3,723,594	+		RR42_RS36865	0.19	-2.6
3,723,594	+		RR42_RS36865	0.19	+0.2
3,723,594	+		RR42_RS36865	0.19	+0.3
3,723,594	+		RR42_RS36865	0.19	+0.9
3,723,595	-		RR42_RS36865	0.19	+0.8
3,723,595	-		RR42_RS36865	0.19	+0.9
3,723,628	+		RR42_RS36865	0.21	-2.7
3,723,628	+		RR42_RS36865	0.21	-3.0
3,723,628	+		RR42_RS36865	0.21	+0.4
3,723,628	+		RR42_RS36865	0.21	-0.2
3,723,629	-		RR42_RS36865	0.21	-0.3
3,723,654	-		RR42_RS36865	0.22	+0.1
3,723,697	-		RR42_RS36865	0.24	-1.6
3,723,697	-		RR42_RS36865	0.24	+0.0
3,723,697	-		RR42_RS36865	0.24	+0.3
3,723,740	-		RR42_RS36865	0.27	-0.6
3,723,830	-		RR42_RS36865	0.31	-3.2
3,723,830	-		RR42_RS36865	0.31	-0.5
3,723,830	-		RR42_RS36865	0.31	-1.0
3,723,841	+		RR42_RS36865	0.32	+0.0
3,723,863	+		RR42_RS36865	0.33	-0.9
3,723,863	+		RR42_RS36865	0.33	-0.4
3,723,863	+		RR42_RS36865	0.33	+0.4
3,723,864	-		RR42_RS36865	0.33	+0.3
3,723,905	+		RR42_RS36865	0.35	-1.0
3,723,906	-		RR42_RS36865	0.35	+1.1
3,723,974	-		RR42_RS36865	0.39	-2.0
3,723,991	-		RR42_RS36865	0.40	-0.7
3,723,991	-		RR42_RS36865	0.40	+0.5