Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS34710 and RR42_RS34715 are separated by 654 nucleotides RR42_RS34715 and RR42_RS34720 are separated by 271 nucleotides
RR42_RS34710: RR42_RS34710 - chemotaxis protein CheY, at 3,229,702 to 3,230,868
_RS34710
RR42_RS34715: RR42_RS34715 - hypothetical protein, at 3,231,523 to 3,231,942
_RS34715
RR42_RS34720: RR42_RS34720 - hypothetical protein, at 3,232,214 to 3,233,881
_RS34720
Position (kb)
3231
3232 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3230.547 kb on - strand, within RR42_RS34710 at 3230.547 kb on - strand, within RR42_RS34710 at 3230.547 kb on - strand, within RR42_RS34710 at 3230.888 kb on + strand at 3230.889 kb on - strand at 3230.889 kb on - strand at 3231.254 kb on + strand at 3231.410 kb on - strand at 3231.415 kb on + strand at 3231.539 kb on + strand at 3231.540 kb on - strand at 3231.540 kb on - strand at 3231.624 kb on - strand, within RR42_RS34715 at 3231.749 kb on - strand, within RR42_RS34715 at 3231.810 kb on + strand, within RR42_RS34715 at 3231.811 kb on - strand, within RR42_RS34715 at 3232.021 kb on - strand at 3232.119 kb on + strand at 3232.401 kb on + strand, within RR42_RS34720 at 3232.401 kb on + strand, within RR42_RS34720 at 3232.402 kb on - strand, within RR42_RS34720 at 3232.402 kb on - strand, within RR42_RS34720 at 3232.402 kb on - strand, within RR42_RS34720 at 3232.402 kb on - strand, within RR42_RS34720 at 3232.405 kb on + strand, within RR42_RS34720 at 3232.405 kb on + strand, within RR42_RS34720 at 3232.712 kb on + strand, within RR42_RS34720 at 3232.713 kb on - strand, within RR42_RS34720 at 3232.732 kb on + strand, within RR42_RS34720 at 3232.732 kb on + strand, within RR42_RS34720 at 3232.732 kb on + strand, within RR42_RS34720 at 3232.733 kb on - strand, within RR42_RS34720
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 3,230,547 - RR42_RS34710 0.72 +0.4 3,230,547 - RR42_RS34710 0.72 -0.0 3,230,547 - RR42_RS34710 0.72 -2.0 3,230,888 + -1.3 3,230,889 - +0.5 3,230,889 - +0.4 3,231,254 + -0.0 3,231,410 - -0.7 3,231,415 + -1.2 3,231,539 + -2.4 3,231,540 - -1.4 3,231,540 - +2.1 3,231,624 - RR42_RS34715 0.24 +0.4 3,231,749 - RR42_RS34715 0.54 -0.0 3,231,810 + RR42_RS34715 0.68 +0.0 3,231,811 - RR42_RS34715 0.69 -2.3 3,232,021 - -0.2 3,232,119 + +2.0 3,232,401 + RR42_RS34720 0.11 -0.2 3,232,401 + RR42_RS34720 0.11 -0.3 3,232,402 - RR42_RS34720 0.11 +0.8 3,232,402 - RR42_RS34720 0.11 +0.9 3,232,402 - RR42_RS34720 0.11 -0.2 3,232,402 - RR42_RS34720 0.11 +2.6 3,232,405 + RR42_RS34720 0.11 -1.1 3,232,405 + RR42_RS34720 0.11 -0.2 3,232,712 + RR42_RS34720 0.30 -1.2 3,232,713 - RR42_RS34720 0.30 +0.3 3,232,732 + RR42_RS34720 0.31 -0.5 3,232,732 + RR42_RS34720 0.31 +0.7 3,232,732 + RR42_RS34720 0.31 +1.4 3,232,733 - RR42_RS34720 0.31 +0.7
Or see this region's nucleotide sequence