Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS32780 and RR42_RS32785 are separated by 19 nucleotides RR42_RS32785 and RR42_RS32790 are separated by 380 nucleotides RR42_RS32790 and RR42_RS32795 are separated by 53 nucleotides
RR42_RS32780: RR42_RS32780 - multidrug transporter, at 2,748,078 to 2,748,986
_RS32780
RR42_RS32785: RR42_RS32785 - chemotaxis protein, at 2,749,006 to 2,750,937
_RS32785
RR42_RS32790: RR42_RS32790 - hypothetical protein, at 2,751,318 to 2,751,569
_RS32790
RR42_RS32795: RR42_RS32795 - DNA polymerase III subunit alpha, at 2,751,623 to 2,755,069
_RS32795
Position (kb)
2749
2750
2751 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2748.255 kb on + strand, within RR42_RS32780 at 2748.255 kb on + strand, within RR42_RS32780 at 2748.256 kb on - strand, within RR42_RS32780 at 2748.361 kb on - strand, within RR42_RS32780 at 2748.493 kb on + strand, within RR42_RS32780 at 2748.493 kb on + strand, within RR42_RS32780 at 2748.493 kb on + strand, within RR42_RS32780 at 2748.494 kb on - strand, within RR42_RS32780 at 2748.610 kb on - strand, within RR42_RS32780 at 2748.774 kb on + strand, within RR42_RS32780 at 2748.774 kb on + strand, within RR42_RS32780 at 2748.775 kb on - strand, within RR42_RS32780 at 2748.775 kb on - strand, within RR42_RS32780 at 2748.775 kb on - strand, within RR42_RS32780 at 2748.804 kb on + strand, within RR42_RS32780 at 2748.805 kb on - strand, within RR42_RS32780 at 2749.884 kb on + strand, within RR42_RS32785 at 2749.885 kb on - strand, within RR42_RS32785 at 2750.432 kb on + strand, within RR42_RS32785 at 2750.433 kb on - strand, within RR42_RS32785 at 2750.830 kb on + strand at 2750.830 kb on + strand at 2750.853 kb on - strand at 2750.996 kb on - strand at 2751.095 kb on + strand at 2751.096 kb on - strand at 2751.096 kb on - strand at 2751.170 kb on + strand at 2751.322 kb on + strand at 2751.322 kb on + strand at 2751.567 kb on + strand at 2751.606 kb on + strand at 2751.625 kb on - strand at 2751.836 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 2,748,255 + RR42_RS32780 0.19 -2.5 2,748,255 + RR42_RS32780 0.19 -2.1 2,748,256 - RR42_RS32780 0.20 +1.4 2,748,361 - RR42_RS32780 0.31 -0.7 2,748,493 + RR42_RS32780 0.46 +0.0 2,748,493 + RR42_RS32780 0.46 +1.8 2,748,493 + RR42_RS32780 0.46 +1.0 2,748,494 - RR42_RS32780 0.46 -2.1 2,748,610 - RR42_RS32780 0.59 +0.7 2,748,774 + RR42_RS32780 0.77 +0.1 2,748,774 + RR42_RS32780 0.77 -2.1 2,748,775 - RR42_RS32780 0.77 +0.0 2,748,775 - RR42_RS32780 0.77 -1.0 2,748,775 - RR42_RS32780 0.77 +0.0 2,748,804 + RR42_RS32780 0.80 -1.8 2,748,805 - RR42_RS32780 0.80 -2.8 2,749,884 + RR42_RS32785 0.45 +0.8 2,749,885 - RR42_RS32785 0.45 +1.0 2,750,432 + RR42_RS32785 0.74 -2.0 2,750,433 - RR42_RS32785 0.74 +0.0 2,750,830 + -1.5 2,750,830 + +1.5 2,750,853 - -0.3 2,750,996 - +0.6 2,751,095 + -0.2 2,751,096 - -1.5 2,751,096 - +1.1 2,751,170 + +1.1 2,751,322 + +1.2 2,751,322 + -1.3 2,751,567 + -1.3 2,751,606 + -1.3 2,751,625 - -0.3 2,751,836 - +0.6
Or see this region's nucleotide sequence